Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_824 and Pf1N1B4_825 are separated by 150 nucleotides Pf1N1B4_825 and Pf1N1B4_826 overlap by 4 nucleotides Pf1N1B4_826 and Pf1N1B4_827 are separated by 129 nucleotides Pf1N1B4_827 and Pf1N1B4_828 overlap by 1 nucleotides
Pf1N1B4_824 - POSSIBLE MEMBRANE PROTEIN, at 945,874 to 946,518
_824
Pf1N1B4_825 - tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase, at 946,669 to 947,412
_825
Pf1N1B4_826 - tRNA (5-methoxyuridine) 34 synthase, at 947,409 to 948,365
_826
Pf1N1B4_827 - tRNA-specific adenosine-34 deaminase (EC 3.5.4.-), at 948,495 to 948,992
_827
Pf1N1B4_828 - Multicopper oxidase, at 948,992 to 950,368
_828
Position (kb) 947
948
949 Strain fitness (log2 ratio) -2
-1
0
1
2 at 946.412 kb on + strand, within Pf1N1B4_824 at 946.413 kb on - strand, within Pf1N1B4_824 at 946.413 kb on - strand, within Pf1N1B4_824 at 946.435 kb on + strand, within Pf1N1B4_824 at 946.435 kb on + strand, within Pf1N1B4_824 at 946.435 kb on + strand, within Pf1N1B4_824 at 946.436 kb on - strand, within Pf1N1B4_824 at 946.436 kb on - strand, within Pf1N1B4_824 at 946.436 kb on - strand, within Pf1N1B4_824 at 946.453 kb on + strand, within Pf1N1B4_824 at 946.453 kb on + strand, within Pf1N1B4_824 at 946.454 kb on - strand at 946.852 kb on + strand, within Pf1N1B4_825 at 946.852 kb on + strand, within Pf1N1B4_825 at 946.938 kb on + strand, within Pf1N1B4_825 at 946.972 kb on + strand, within Pf1N1B4_825 at 946.973 kb on - strand, within Pf1N1B4_825 at 947.251 kb on + strand, within Pf1N1B4_825 at 947.383 kb on - strand at 947.799 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.802 kb on + strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.803 kb on - strand, within Pf1N1B4_826 at 947.895 kb on + strand, within Pf1N1B4_826 at 947.895 kb on + strand at 947.896 kb on - strand, within Pf1N1B4_826 at 947.995 kb on - strand, within Pf1N1B4_826 at 948.267 kb on + strand at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.267 kb on + strand, within Pf1N1B4_826 at 948.268 kb on - strand, within Pf1N1B4_826 at 948.363 kb on + strand at 948.363 kb on + strand at 948.363 kb on + strand at 948.388 kb on + strand at 948.388 kb on + strand at 948.389 kb on - strand at 948.497 kb on - strand at 948.497 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.120 kb on - strand at 949.135 kb on - strand, within Pf1N1B4_828 at 949.135 kb on - strand, within Pf1N1B4_828 at 949.237 kb on - strand, within Pf1N1B4_828 at 949.237 kb on - strand, within Pf1N1B4_828
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 946,412 + Pf1N1B4_824 0.83 -0.8 946,413 - Pf1N1B4_824 0.84 -0.5 946,413 - Pf1N1B4_824 0.84 -0.0 946,435 + Pf1N1B4_824 0.87 -0.1 946,435 + Pf1N1B4_824 0.87 -1.2 946,435 + Pf1N1B4_824 0.87 -0.5 946,436 - Pf1N1B4_824 0.87 +0.2 946,436 - Pf1N1B4_824 0.87 -0.9 946,436 - Pf1N1B4_824 0.87 -0.1 946,453 + Pf1N1B4_824 0.90 +1.0 946,453 + Pf1N1B4_824 0.90 -0.0 946,454 - -0.9 946,852 + Pf1N1B4_825 0.25 +0.3 946,852 + Pf1N1B4_825 0.25 -0.1 946,938 + Pf1N1B4_825 0.36 +0.1 946,972 + Pf1N1B4_825 0.41 +0.1 946,973 - Pf1N1B4_825 0.41 +1.1 947,251 + Pf1N1B4_825 0.78 -1.1 947,383 - +2.1 947,799 + Pf1N1B4_826 0.41 +0.5 947,802 + +0.1 947,802 + Pf1N1B4_826 0.41 +0.5 947,802 + Pf1N1B4_826 0.41 -0.7 947,802 + Pf1N1B4_826 0.41 -0.2 947,802 + Pf1N1B4_826 0.41 -1.2 947,802 + Pf1N1B4_826 0.41 -1.0 947,803 - Pf1N1B4_826 0.41 -2.1 947,803 - Pf1N1B4_826 0.41 +0.7 947,803 - Pf1N1B4_826 0.41 -1.1 947,803 - Pf1N1B4_826 0.41 -0.5 947,803 - Pf1N1B4_826 0.41 -1.6 947,803 - Pf1N1B4_826 0.41 +0.1 947,895 + Pf1N1B4_826 0.51 -0.5 947,895 + +1.1 947,896 - Pf1N1B4_826 0.51 +1.0 947,995 - Pf1N1B4_826 0.61 -0.6 948,267 + -1.5 948,267 + Pf1N1B4_826 0.90 -0.9 948,267 + Pf1N1B4_826 0.90 +0.7 948,267 + Pf1N1B4_826 0.90 -0.6 948,267 + Pf1N1B4_826 0.90 -1.5 948,268 - Pf1N1B4_826 0.90 -1.9 948,363 + +1.3 948,363 + +0.1 948,363 + +0.5 948,388 + +0.2 948,388 + -0.9 948,389 - +2.4 948,497 - -0.9 948,497 - -0.9 949,120 - -1.3 949,120 - +0.3 949,120 - +0.1 949,120 - -0.2 949,135 - Pf1N1B4_828 0.10 -0.4 949,135 - Pf1N1B4_828 0.10 +0.1 949,237 - Pf1N1B4_828 0.18 +1.1 949,237 - Pf1N1B4_828 0.18 -1.0
Or see this region's nucleotide sequence