Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5965

Experiment: Tetracycline 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5964 and Pf1N1B4_5965 are separated by 11 nucleotidesPf1N1B4_5965 and Pf1N1B4_5966 overlap by 8 nucleotidesPf1N1B4_5966 and Pf1N1B4_5967 overlap by 4 nucleotides Pf1N1B4_5964 - 4-hydroxyproline epimerase (EC 5.1.1.8), at 412,354 to 413,286 _5964 Pf1N1B4_5965 - D-amino-acid oxidase (EC 1.4.3.3), at 413,298 to 414,398 _5965 Pf1N1B4_5966 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 414,391 to 414,627 _5966 Pf1N1B4_5967 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 414,624 to 415,880 _5967 Position (kb) 413 414 415Strain fitness (log2 ratio) -3 -2 -1 0 1at 412.907 kb on - strand, within Pf1N1B4_5964at 412.907 kb on - strand, within Pf1N1B4_5964at 412.907 kb on - strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.908 kb on + strand, within Pf1N1B4_5964at 412.909 kb on - strandat 412.909 kb on - strand, within Pf1N1B4_5964at 412.912 kb on + strand, within Pf1N1B4_5964at 412.913 kb on - strand, within Pf1N1B4_5964at 412.913 kb on - strand, within Pf1N1B4_5964at 412.913 kb on - strand, within Pf1N1B4_5964at 412.913 kb on - strand, within Pf1N1B4_5964at 412.944 kb on + strand, within Pf1N1B4_5964at 412.944 kb on + strand, within Pf1N1B4_5964at 412.946 kb on + strandat 412.946 kb on + strand, within Pf1N1B4_5964at 412.946 kb on + strand, within Pf1N1B4_5964at 412.947 kb on - strand, within Pf1N1B4_5964at 412.947 kb on - strand, within Pf1N1B4_5964at 412.947 kb on - strand, within Pf1N1B4_5964at 413.170 kb on + strand, within Pf1N1B4_5964at 413.171 kb on - strand, within Pf1N1B4_5964at 413.171 kb on - strand, within Pf1N1B4_5964at 413.221 kb on - strandat 413.595 kb on + strand, within Pf1N1B4_5965at 413.595 kb on + strand, within Pf1N1B4_5965at 413.595 kb on + strand, within Pf1N1B4_5965at 413.595 kb on + strand, within Pf1N1B4_5965at 413.894 kb on - strand, within Pf1N1B4_5965at 413.958 kb on - strand, within Pf1N1B4_5965at 413.976 kb on + strand, within Pf1N1B4_5965at 413.977 kb on - strandat 414.023 kb on + strand, within Pf1N1B4_5965at 414.138 kb on + strand, within Pf1N1B4_5965at 414.138 kb on + strand, within Pf1N1B4_5965at 414.139 kb on - strand, within Pf1N1B4_5965at 414.391 kb on - strandat 414.918 kb on + strand, within Pf1N1B4_5967at 414.919 kb on - strand, within Pf1N1B4_5967at 414.955 kb on + strand, within Pf1N1B4_5967at 414.956 kb on - strand, within Pf1N1B4_5967at 414.956 kb on - strand, within Pf1N1B4_5967at 414.956 kb on - strand, within Pf1N1B4_5967

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml
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412,907 - Pf1N1B4_5964 0.59 -0.7
412,907 - Pf1N1B4_5964 0.59 -1.7
412,907 - Pf1N1B4_5964 0.59 -0.8
412,908 + Pf1N1B4_5964 0.59 -1.2
412,908 + Pf1N1B4_5964 0.59 +0.6
412,908 + Pf1N1B4_5964 0.59 -0.5
412,908 + Pf1N1B4_5964 0.59 +0.8
412,908 + Pf1N1B4_5964 0.59 -1.0
412,908 + Pf1N1B4_5964 0.59 +1.0
412,908 + Pf1N1B4_5964 0.59 +0.2
412,909 - -2.2
412,909 - Pf1N1B4_5964 0.59 -2.2
412,912 + Pf1N1B4_5964 0.60 -1.0
412,913 - Pf1N1B4_5964 0.60 -0.4
412,913 - Pf1N1B4_5964 0.60 +0.6
412,913 - Pf1N1B4_5964 0.60 -0.8
412,913 - Pf1N1B4_5964 0.60 -0.7
412,944 + Pf1N1B4_5964 0.63 -1.7
412,944 + Pf1N1B4_5964 0.63 +0.5
412,946 + -0.4
412,946 + Pf1N1B4_5964 0.63 -0.2
412,946 + Pf1N1B4_5964 0.63 -0.0
412,947 - Pf1N1B4_5964 0.64 -2.0
412,947 - Pf1N1B4_5964 0.64 +1.5
412,947 - Pf1N1B4_5964 0.64 -1.7
413,170 + Pf1N1B4_5964 0.87 -1.2
413,171 - Pf1N1B4_5964 0.88 +0.6
413,171 - Pf1N1B4_5964 0.88 +0.6
413,221 - -0.1
413,595 + Pf1N1B4_5965 0.27 +0.0
413,595 + Pf1N1B4_5965 0.27 +0.0
413,595 + Pf1N1B4_5965 0.27 +0.0
413,595 + Pf1N1B4_5965 0.27 -1.0
413,894 - Pf1N1B4_5965 0.54 -0.2
413,958 - Pf1N1B4_5965 0.60 -1.6
413,976 + Pf1N1B4_5965 0.62 -2.4
413,977 - -2.0
414,023 + Pf1N1B4_5965 0.66 +0.6
414,138 + Pf1N1B4_5965 0.76 -0.8
414,138 + Pf1N1B4_5965 0.76 -0.8
414,139 - Pf1N1B4_5965 0.76 -0.7
414,391 - +0.3
414,918 + Pf1N1B4_5967 0.23 -1.7
414,919 - Pf1N1B4_5967 0.23 -2.1
414,955 + Pf1N1B4_5967 0.26 +0.6
414,956 - Pf1N1B4_5967 0.26 +0.2
414,956 - Pf1N1B4_5967 0.26 -2.8
414,956 - Pf1N1B4_5967 0.26 +0.8

Or see this region's nucleotide sequence