Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5076 and Pf1N1B4_5077 are separated by 10 nucleotides Pf1N1B4_5077 and Pf1N1B4_5078 are separated by 42 nucleotides Pf1N1B4_5078 and Pf1N1B4_5079 are separated by 509 nucleotides
Pf1N1B4_5076 - FIG00641944: hypothetical protein, at 5,621,765 to 5,623,057
_5076
Pf1N1B4_5077 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 5,623,068 to 5,623,973
_5077
Pf1N1B4_5078 - Transcriptional regulator PhnF, at 5,624,016 to 5,624,720
_5078
Pf1N1B4_5079 - Ferrichrome-iron receptor, at 5,625,230 to 5,627,326
_5079
Position (kb) 5624
5625 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5623.666 kb on + strand, within Pf1N1B4_5077 at 5623.667 kb on - strand, within Pf1N1B4_5077 at 5623.678 kb on - strand, within Pf1N1B4_5077 at 5624.056 kb on + strand at 5624.057 kb on - strand at 5624.057 kb on - strand at 5624.057 kb on - strand at 5624.207 kb on - strand, within Pf1N1B4_5078 at 5624.775 kb on - strand at 5624.839 kb on - strand at 5625.205 kb on - strand at 5625.207 kb on - strand at 5625.232 kb on - strand at 5625.241 kb on - strand at 5625.241 kb on - strand at 5625.286 kb on - strand at 5625.372 kb on + strand at 5625.373 kb on - strand at 5625.399 kb on + strand at 5625.399 kb on + strand at 5625.399 kb on + strand at 5625.399 kb on + strand at 5625.400 kb on - strand at 5625.400 kb on - strand at 5625.400 kb on - strand at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.453 kb on + strand, within Pf1N1B4_5079 at 5625.454 kb on - strand at 5625.454 kb on - strand, within Pf1N1B4_5079 at 5625.454 kb on - strand, within Pf1N1B4_5079 at 5625.454 kb on - strand, within Pf1N1B4_5079
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 5,623,666 + Pf1N1B4_5077 0.66 +3.6 5,623,667 - Pf1N1B4_5077 0.66 +0.8 5,623,678 - Pf1N1B4_5077 0.67 +0.0 5,624,056 + +2.0 5,624,057 - +1.9 5,624,057 - -1.0 5,624,057 - -1.1 5,624,207 - Pf1N1B4_5078 0.27 -0.7 5,624,775 - +2.0 5,624,839 - -0.0 5,625,205 - +0.0 5,625,207 - +0.5 5,625,232 - +0.5 5,625,241 - +0.5 5,625,241 - -2.1 5,625,286 - +0.3 5,625,372 + -1.1 5,625,373 - -0.5 5,625,399 + -0.1 5,625,399 + -1.9 5,625,399 + +1.5 5,625,399 + -0.8 5,625,400 - -0.1 5,625,400 - +0.3 5,625,400 - -0.4 5,625,453 + Pf1N1B4_5079 0.11 +0.0 5,625,453 + Pf1N1B4_5079 0.11 -0.1 5,625,453 + Pf1N1B4_5079 0.11 +0.5 5,625,453 + Pf1N1B4_5079 0.11 -0.7 5,625,454 - +0.5 5,625,454 - Pf1N1B4_5079 0.11 +0.1 5,625,454 - Pf1N1B4_5079 0.11 -0.1 5,625,454 - Pf1N1B4_5079 0.11 -1.8
Or see this region's nucleotide sequence