Experiment: Tetracycline 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4817 and Pf1N1B4_4818 are separated by 0 nucleotides Pf1N1B4_4818 and Pf1N1B4_4819 are separated by 80 nucleotides
Pf1N1B4_4817 - Fe2+-dicitrate sensor, membrane component, at 5,321,289 to 5,322,266
_4817
Pf1N1B4_4818 - RNA polymerase sigma-70 factor, ECF subfamily, at 5,322,267 to 5,322,782
_4818
Pf1N1B4_4819 - Multidrug resistance protein B, at 5,322,863 to 5,324,107
_4819
Position (kb) 5322
5323 Strain fitness (log2 ratio) -1
0
1
2 at 5321.274 kb on + strand at 5321.323 kb on - strand at 5321.439 kb on + strand, within Pf1N1B4_4817 at 5321.490 kb on + strand, within Pf1N1B4_4817 at 5321.490 kb on + strand, within Pf1N1B4_4817 at 5321.490 kb on + strand, within Pf1N1B4_4817 at 5321.491 kb on - strand, within Pf1N1B4_4817 at 5321.491 kb on - strand, within Pf1N1B4_4817 at 5321.766 kb on + strand, within Pf1N1B4_4817 at 5321.767 kb on - strand at 5322.361 kb on + strand, within Pf1N1B4_4818 at 5322.361 kb on + strand, within Pf1N1B4_4818 at 5322.396 kb on - strand at 5322.396 kb on - strand, within Pf1N1B4_4818 at 5322.701 kb on - strand, within Pf1N1B4_4818 at 5322.701 kb on - strand, within Pf1N1B4_4818 at 5322.910 kb on - strand at 5322.945 kb on + strand at 5322.946 kb on - strand at 5322.946 kb on - strand at 5322.967 kb on - strand at 5322.967 kb on - strand at 5323.043 kb on - strand, within Pf1N1B4_4819 at 5323.066 kb on - strand at 5323.152 kb on + strand, within Pf1N1B4_4819 at 5323.219 kb on + strand, within Pf1N1B4_4819 at 5323.273 kb on - strand, within Pf1N1B4_4819 at 5323.371 kb on + strand, within Pf1N1B4_4819 at 5323.371 kb on + strand, within Pf1N1B4_4819 at 5323.372 kb on - strand, within Pf1N1B4_4819 at 5323.372 kb on - strand, within Pf1N1B4_4819 at 5323.466 kb on - strand, within Pf1N1B4_4819
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0004 mg/ml remove 5,321,274 + +0.4 5,321,323 - -0.2 5,321,439 + Pf1N1B4_4817 0.15 +0.4 5,321,490 + Pf1N1B4_4817 0.21 -0.1 5,321,490 + Pf1N1B4_4817 0.21 +2.0 5,321,490 + Pf1N1B4_4817 0.21 +0.0 5,321,491 - Pf1N1B4_4817 0.21 -0.2 5,321,491 - Pf1N1B4_4817 0.21 -0.7 5,321,766 + Pf1N1B4_4817 0.49 +0.4 5,321,767 - +2.0 5,322,361 + Pf1N1B4_4818 0.18 -1.7 5,322,361 + Pf1N1B4_4818 0.18 -1.2 5,322,396 - -1.6 5,322,396 - Pf1N1B4_4818 0.25 -0.6 5,322,701 - Pf1N1B4_4818 0.84 +0.3 5,322,701 - Pf1N1B4_4818 0.84 -1.6 5,322,910 - +0.4 5,322,945 + +0.1 5,322,946 - -1.2 5,322,946 - -0.2 5,322,967 - -0.6 5,322,967 - -0.6 5,323,043 - Pf1N1B4_4819 0.14 -0.8 5,323,066 - +2.4 5,323,152 + Pf1N1B4_4819 0.23 -1.0 5,323,219 + Pf1N1B4_4819 0.29 -0.2 5,323,273 - Pf1N1B4_4819 0.33 -0.2 5,323,371 + Pf1N1B4_4819 0.41 +0.9 5,323,371 + Pf1N1B4_4819 0.41 +0.4 5,323,372 - Pf1N1B4_4819 0.41 +0.1 5,323,372 - Pf1N1B4_4819 0.41 +0.5 5,323,466 - Pf1N1B4_4819 0.48 -1.3
Or see this region's nucleotide sequence