Experiment: Defined media, anaerobic, with FW303 groundwater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20530 and IAI47_20535 are separated by 9 nucleotides IAI47_20535 and IAI47_20540 are separated by 85 nucleotides IAI47_20540 and IAI47_20545 overlap by 11 nucleotides IAI47_20545 and IAI47_20550 are separated by 230 nucleotides
IAI47_20530: IAI47_20530 - maltose ABC transporter permease MalF, at 355,967 to 357,493
_20530
IAI47_20535: IAI47_20535 - maltose ABC transporter permease MalG, at 357,503 to 358,393
_20535
IAI47_20540: IAI47_20540 - TetR/AcrR family transcriptional regulator, at 358,479 to 359,087
_20540
IAI47_20545: IAI47_20545 - NAD(P)H-dependent oxidoreductase, at 359,077 to 359,679
_20545
IAI47_20550: IAI47_20550 - ABC transporter permease, at 359,910 to 360,578
_20550
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 357.502 kb on + strand at 357.503 kb on - strand at 357.503 kb on - strand at 357.503 kb on - strand at 357.508 kb on + strand at 357.509 kb on - strand at 357.509 kb on - strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.513 kb on + strand at 357.514 kb on - strand at 357.514 kb on - strand at 357.567 kb on + strand at 357.567 kb on + strand at 357.567 kb on + strand at 357.568 kb on - strand at 357.568 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.572 kb on - strand at 357.750 kb on + strand, within IAI47_20535 at 357.750 kb on + strand, within IAI47_20535 at 357.751 kb on - strand, within IAI47_20535 at 357.838 kb on + strand, within IAI47_20535 at 357.839 kb on - strand, within IAI47_20535 at 357.882 kb on + strand, within IAI47_20535 at 357.883 kb on - strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.923 kb on + strand, within IAI47_20535 at 357.924 kb on - strand, within IAI47_20535 at 357.924 kb on - strand, within IAI47_20535 at 357.950 kb on + strand, within IAI47_20535 at 357.950 kb on + strand, within IAI47_20535 at 357.951 kb on - strand, within IAI47_20535 at 357.951 kb on - strand, within IAI47_20535 at 357.951 kb on - strand, within IAI47_20535 at 357.974 kb on - strand, within IAI47_20535 at 357.974 kb on - strand, within IAI47_20535 at 357.998 kb on + strand, within IAI47_20535 at 357.998 kb on + strand, within IAI47_20535 at 357.998 kb on + strand, within IAI47_20535 at 357.999 kb on - strand, within IAI47_20535 at 358.000 kb on + strand, within IAI47_20535 at 358.001 kb on - strand, within IAI47_20535 at 358.001 kb on - strand, within IAI47_20535 at 358.001 kb on - strand, within IAI47_20535 at 358.041 kb on - strand, within IAI47_20535 at 358.160 kb on - strand, within IAI47_20535 at 358.160 kb on - strand, within IAI47_20535 at 358.229 kb on + strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.230 kb on - strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.256 kb on + strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.257 kb on - strand, within IAI47_20535 at 358.274 kb on + strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.275 kb on - strand, within IAI47_20535 at 358.360 kb on - strand at 358.391 kb on + strand at 358.392 kb on - strand at 358.392 kb on - strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.407 kb on + strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.408 kb on - strand at 358.422 kb on + strand at 358.422 kb on + strand at 358.423 kb on - strand at 358.423 kb on - strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.480 kb on + strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.481 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.500 kb on - strand at 358.650 kb on - strand, within IAI47_20540 at 358.650 kb on - strand, within IAI47_20540 at 358.697 kb on - strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.789 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.888 kb on + strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.889 kb on - strand, within IAI47_20540 at 358.930 kb on + strand, within IAI47_20540 at 358.931 kb on - strand, within IAI47_20540 at 359.071 kb on - strand at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.138 kb on + strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.139 kb on - strand, within IAI47_20545 at 359.170 kb on + strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.171 kb on - strand, within IAI47_20545 at 359.383 kb on + strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.384 kb on - strand, within IAI47_20545 at 359.420 kb on + strand, within IAI47_20545 at 359.421 kb on - strand, within IAI47_20545 at 359.598 kb on + strand, within IAI47_20545 at 359.599 kb on - strand, within IAI47_20545 at 359.665 kb on + strand at 359.665 kb on + strand at 359.665 kb on + strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.666 kb on - strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.668 kb on + strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.669 kb on - strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.691 kb on + strand at 359.692 kb on - strand at 359.692 kb on - strand at 359.729 kb on - strand at 359.734 kb on + strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.756 kb on - strand at 359.840 kb on - strand at 359.902 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.911 kb on + strand at 359.911 kb on + strand at 359.912 kb on - strand at 359.920 kb on + strand at 359.968 kb on - strand at 360.026 kb on - strand, within IAI47_20550
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media, anaerobic, with FW303 groundwater remove 357,502 + +1.0 357,503 - -0.1 357,503 - +1.3 357,503 - +0.5 357,508 + +0.4 357,509 - -0.0 357,509 - +0.4 357,513 + +0.2 357,513 + +0.1 357,513 + -0.3 357,513 + -0.2 357,513 + +0.5 357,513 + +0.1 357,514 - +1.1 357,514 - +0.6 357,567 + +0.4 357,567 + +0.7 357,567 + -0.1 357,568 - -0.8 357,568 - -0.4 357,572 - +1.2 357,572 - +0.7 357,572 - -1.0 357,572 - -0.2 357,572 - +0.5 357,750 + IAI47_20535 0.28 -0.3 357,750 + IAI47_20535 0.28 -0.7 357,751 - IAI47_20535 0.28 -0.1 357,838 + IAI47_20535 0.38 +0.6 357,839 - IAI47_20535 0.38 -0.1 357,882 + IAI47_20535 0.43 -0.4 357,883 - IAI47_20535 0.43 +0.1 357,923 + IAI47_20535 0.47 +0.2 357,923 + IAI47_20535 0.47 +1.5 357,923 + IAI47_20535 0.47 -0.2 357,923 + IAI47_20535 0.47 +0.9 357,924 - IAI47_20535 0.47 -1.0 357,924 - IAI47_20535 0.47 +0.1 357,950 + IAI47_20535 0.50 -0.1 357,950 + IAI47_20535 0.50 -0.1 357,951 - IAI47_20535 0.50 +0.1 357,951 - IAI47_20535 0.50 +0.9 357,951 - IAI47_20535 0.50 +0.2 357,974 - IAI47_20535 0.53 +0.8 357,974 - IAI47_20535 0.53 +0.1 357,998 + IAI47_20535 0.56 +0.5 357,998 + IAI47_20535 0.56 -0.8 357,998 + IAI47_20535 0.56 +0.4 357,999 - IAI47_20535 0.56 -0.0 358,000 + IAI47_20535 0.56 +0.3 358,001 - IAI47_20535 0.56 -1.4 358,001 - IAI47_20535 0.56 +0.2 358,001 - IAI47_20535 0.56 -1.2 358,041 - IAI47_20535 0.60 -1.2 358,160 - IAI47_20535 0.74 +0.3 358,160 - IAI47_20535 0.74 +0.2 358,229 + IAI47_20535 0.81 -0.6 358,230 - IAI47_20535 0.82 +0.2 358,230 - IAI47_20535 0.82 +0.1 358,256 + IAI47_20535 0.85 +0.8 358,256 + IAI47_20535 0.85 +0.6 358,256 + IAI47_20535 0.85 +0.5 358,257 - IAI47_20535 0.85 -0.1 358,257 - IAI47_20535 0.85 +0.1 358,257 - IAI47_20535 0.85 +0.0 358,274 + IAI47_20535 0.87 +0.6 358,275 - IAI47_20535 0.87 +0.6 358,275 - IAI47_20535 0.87 +1.8 358,275 - IAI47_20535 0.87 +0.3 358,275 - IAI47_20535 0.87 +1.3 358,360 - -0.4 358,391 + -0.2 358,392 - -0.7 358,392 - +0.8 358,407 + +0.3 358,407 + +0.2 358,407 + -1.1 358,408 - +0.5 358,408 - +1.1 358,408 - +0.5 358,408 - +1.4 358,422 + +0.2 358,422 + -0.0 358,423 - +0.2 358,423 - -1.5 358,480 + +1.0 358,480 + +0.4 358,480 + +0.1 358,480 + +0.8 358,480 + +0.3 358,481 - -0.1 358,481 - -0.1 358,481 - +0.6 358,481 - +0.8 358,500 - -0.1 358,500 - -0.5 358,500 - -0.0 358,650 - IAI47_20540 0.28 +2.5 358,650 - IAI47_20540 0.28 -0.5 358,697 - IAI47_20540 0.36 -0.2 358,789 + IAI47_20540 0.51 +1.0 358,789 + IAI47_20540 0.51 +0.3 358,789 + IAI47_20540 0.51 -0.1 358,789 + IAI47_20540 0.51 +0.1 358,888 + IAI47_20540 0.67 +0.7 358,888 + IAI47_20540 0.67 -0.1 358,889 - IAI47_20540 0.67 -0.2 358,889 - IAI47_20540 0.67 +0.2 358,889 - IAI47_20540 0.67 +0.1 358,930 + IAI47_20540 0.74 -0.3 358,931 - IAI47_20540 0.74 -1.7 359,071 - +1.2 359,138 + IAI47_20545 0.10 +0.2 359,138 + IAI47_20545 0.10 +0.7 359,138 + IAI47_20545 0.10 +0.4 359,138 + IAI47_20545 0.10 +1.3 359,138 + IAI47_20545 0.10 +0.1 359,139 - IAI47_20545 0.10 +1.9 359,139 - IAI47_20545 0.10 -0.7 359,170 + IAI47_20545 0.15 -0.9 359,171 - IAI47_20545 0.16 +1.0 359,171 - IAI47_20545 0.16 +0.4 359,171 - IAI47_20545 0.16 +1.7 359,171 - IAI47_20545 0.16 -0.2 359,383 + IAI47_20545 0.51 -0.5 359,384 - IAI47_20545 0.51 -0.0 359,384 - IAI47_20545 0.51 -0.7 359,384 - IAI47_20545 0.51 -1.4 359,384 - IAI47_20545 0.51 +0.6 359,420 + IAI47_20545 0.57 +0.7 359,421 - IAI47_20545 0.57 +0.7 359,598 + IAI47_20545 0.86 +0.4 359,599 - IAI47_20545 0.87 +0.6 359,665 + -0.1 359,665 + +1.1 359,665 + +0.2 359,666 - -1.7 359,666 - +0.1 359,666 - -1.5 359,666 - -0.1 359,666 - -0.2 359,668 + +0.4 359,668 + +0.0 359,668 + +0.2 359,669 - -0.3 359,669 - -1.4 359,669 - -3.1 359,669 - -0.9 359,669 - -0.2 359,669 - +0.0 359,669 - -1.1 359,691 + -0.6 359,691 + +0.7 359,691 + +0.5 359,692 - +0.4 359,692 - -0.1 359,729 - +1.7 359,734 + -0.3 359,756 - +0.9 359,756 - -0.2 359,756 - +0.4 359,840 - -0.7 359,902 + -1.3 359,904 + -1.8 359,905 - +0.0 359,905 - +0.8 359,911 + +0.7 359,911 + +0.0 359,912 - +0.8 359,920 + -0.6 359,968 - -1.1 360,026 - IAI47_20550 0.17 -0.5
Or see this region's nucleotide sequence