Strain Fitness in Pantoea sp. MT58 around IAI47_17580

Experiment: Defined media, anaerobic, with FW303 groundwater

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media, anaerobic, with FW303 groundwater
3,727,936	+		IAI47_17575	0.48	+0.4
3,727,937	-		IAI47_17575	0.48	+1.4
3,727,945	+		IAI47_17575	0.48	+0.2
3,727,946	-		IAI47_17575	0.49	+0.4
3,727,946	-		IAI47_17575	0.49	+0.3
3,727,964	+		IAI47_17575	0.50	+0.4
3,728,001	+		IAI47_17575	0.53	+4.3
3,728,001	+		IAI47_17575	0.53	-0.5
3,728,001	+		IAI47_17575	0.53	-0.4
3,728,002	-		IAI47_17575	0.53	+0.2
3,728,002	-		IAI47_17575	0.53	-0.0
3,728,037	+		IAI47_17575	0.56	+0.5
3,728,037	+		IAI47_17575	0.56	+0.6
3,728,038	-		IAI47_17575	0.56	-0.4
3,728,038	-		IAI47_17575	0.56	+1.2
3,728,038	-		IAI47_17575	0.56	+0.6
3,728,038	-		IAI47_17575	0.56	+1.5
3,728,058	+		IAI47_17575	0.58	-0.8
3,728,058	+		IAI47_17575	0.58	+0.0
3,728,058	+		IAI47_17575	0.58	+0.2
3,728,059	-		IAI47_17575	0.58	+0.2
3,728,082	+		IAI47_17575	0.59	-2.4
3,728,082	+		IAI47_17575	0.59	+0.1
3,728,082	+		IAI47_17575	0.59	+0.1
3,728,082	+		IAI47_17575	0.59	+0.4
3,728,082	+		IAI47_17575	0.59	-1.3
3,728,083	-		IAI47_17575	0.60	+0.3
3,728,083	-		IAI47_17575	0.60	-0.7
3,728,083	-		IAI47_17575	0.60	-0.0
3,728,083	-		IAI47_17575	0.60	+0.3
3,728,083	-		IAI47_17575	0.60	+0.6
3,728,083	-		IAI47_17575	0.60	+0.0
3,728,149	+		IAI47_17575	0.65	-1.4
3,728,149	+		IAI47_17575	0.65	-0.1
3,728,149	+		IAI47_17575	0.65	+0.7
3,728,150	-		IAI47_17575	0.65	-0.9
3,728,236	+		IAI47_17575	0.72	-0.5
3,728,236	+		IAI47_17575	0.72	+0.3
3,728,236	+		IAI47_17575	0.72	+0.1
3,728,237	-		IAI47_17575	0.72	+0.5
3,728,237	-		IAI47_17575	0.72	+0.3
3,728,237	-		IAI47_17575	0.72	+0.9
3,728,237	-		IAI47_17575	0.72	-0.4
3,728,263	+		IAI47_17575	0.74	+0.5
3,728,272	+		IAI47_17575	0.75	-0.1
3,728,273	-		IAI47_17575	0.75	-0.8
3,728,273	-		IAI47_17575	0.75	+0.6
3,728,273	-		IAI47_17575	0.75	-1.3
3,728,279	+		IAI47_17575	0.75	-0.8
3,728,279	+		IAI47_17575	0.75	-0.5
3,728,279	+		IAI47_17575	0.75	-1.3
3,728,279	+		IAI47_17575	0.75	-0.2
3,728,279	+		IAI47_17575	0.75	+1.6
3,728,280	-		IAI47_17575	0.75	+0.2
3,728,280	-		IAI47_17575	0.75	+1.0
3,728,284	+		IAI47_17575	0.76	+0.8
3,728,284	+		IAI47_17575	0.76	+0.8
3,728,284	+		IAI47_17575	0.76	-0.7
3,728,284	+		IAI47_17575	0.76	+0.2
3,728,284	+		IAI47_17575	0.76	-0.1
3,728,284	+		IAI47_17575	0.76	-0.3
3,728,285	-		IAI47_17575	0.76	+0.8
3,728,285	-		IAI47_17575	0.76	-0.9
3,728,285	-		IAI47_17575	0.76	+1.2
3,728,285	-		IAI47_17575	0.76	-0.3
3,728,285	-		IAI47_17575	0.76	-0.1
3,728,285	-		IAI47_17575	0.76	+0.3
3,728,285	-		IAI47_17575	0.76	+0.4
3,728,285	-		IAI47_17575	0.76	+1.2
3,728,294	+		IAI47_17575	0.76	+0.1
3,728,294	+		IAI47_17575	0.76	+1.5
3,728,295	-		IAI47_17575	0.77	+0.5
3,728,295	-		IAI47_17575	0.77	-2.3
3,728,355	+		IAI47_17575	0.81	+0.2
3,728,355	+		IAI47_17575	0.81	+0.0
3,728,356	-		IAI47_17575	0.81	-0.1
3,728,356	-		IAI47_17575	0.81	+0.2
3,728,457	+		IAI47_17575	0.90	+0.2
3,728,457	+		IAI47_17575	0.90	-0.3
3,728,457	+		IAI47_17575	0.90	-1.1
3,728,457	+		IAI47_17575	0.90	-0.1
3,728,457	+		IAI47_17575	0.90	-0.6
3,728,457	+		IAI47_17575	0.90	-1.7
3,728,458	-		IAI47_17575	0.90	-0.3
3,728,458	-		IAI47_17575	0.90	-0.4
3,728,458	-		IAI47_17575	0.90	+0.2
3,728,458	-		IAI47_17575	0.90	-0.9
3,728,458	-		IAI47_17575	0.90	+0.0
3,728,458	-		IAI47_17575	0.90	-0.5
3,728,578	+				+0.1
3,728,578	+				-0.4
3,728,578	+				-0.9
3,728,579	-				+0.5
3,728,579	-				-0.1
3,728,579	-				+0.2
3,728,579	-				-0.3
3,728,593	-				+0.1
3,728,634	+				+0.5
3,728,634	+				+0.4
3,728,635	-				+0.7
3,728,642	+				+0.8
3,728,642	+				-2.5
3,728,642	+				+0.4
3,728,642	+				-0.8
3,728,663	+				+0.3
3,728,710	+				+0.3
3,728,711	-				+0.2
3,728,711	-				+0.6
3,728,720	+				-0.1
3,728,720	+				+0.3
3,728,730	+				+0.3
3,728,730	+				-0.0
3,728,730	+				-0.6
3,728,731	-				+0.1
3,728,731	-				+0.6
3,728,766	+				+0.1
3,728,770	-				-0.1
3,728,784	-				+1.2
3,728,787	+				-0.5
3,728,799	+				+0.9
3,728,800	-				-1.3
3,728,846	-				+0.2
3,728,848	+				+0.6
3,728,848	+				+0.6
3,728,849	-				+0.3
3,728,849	-				-0.0
3,728,852	+				+1.6
3,728,853	-				-0.1
3,728,853	-				+0.8
3,728,853	-				+0.4
3,728,853	-				+0.5
3,728,853	-				-1.4
3,728,854	+				-0.7
3,728,854	+				-0.1
3,728,855	-				-0.0
3,728,855	-				-0.5
3,728,858	+				+0.0
3,728,859	-				+0.8
3,728,859	-				-0.1
3,728,892	-				+1.5
3,728,904	+				+0.9
3,728,906	+				-0.7
3,728,906	+				-0.0
3,728,906	+				-0.2
3,728,940	+				-0.3
3,728,948	+				-0.4
3,728,949	-				+0.3
3,728,949	-				-2.0
3,728,949	-				+0.4
3,728,949	-				-1.2
3,728,958	+				+0.6
3,728,987	+				+0.8
3,729,003	-		IAI47_17580	0.11	+0.7
3,729,004	+		IAI47_17580	0.11	+0.8
3,729,005	-		IAI47_17580	0.12	+0.9
3,729,005	-		IAI47_17580	0.12	+0.5
3,729,006	+		IAI47_17580	0.12	-1.0
3,729,013	+		IAI47_17580	0.13	-0.6
3,729,013	+		IAI47_17580	0.13	+1.2
3,729,013	+		IAI47_17580	0.13	+1.3
3,729,014	-		IAI47_17580	0.13	-0.4
3,729,014	-		IAI47_17580	0.13	-0.1
3,729,018	+		IAI47_17580	0.13	-0.2
3,729,019	-		IAI47_17580	0.14	+0.4
3,729,027	+		IAI47_17580	0.15	+0.1
3,729,027	+		IAI47_17580	0.15	+0.5
3,729,027	+		IAI47_17580	0.15	-0.5
3,729,027	+		IAI47_17580	0.15	-1.0
3,729,028	-		IAI47_17580	0.15	-1.9
3,729,040	-		IAI47_17580	0.17	-0.8
3,729,045	+		IAI47_17580	0.18	+0.9
3,729,046	-		IAI47_17580	0.18	+1.1
3,729,046	-		IAI47_17580	0.18	-0.0
3,729,046	-		IAI47_17580	0.18	+0.3
3,729,064	+		IAI47_17580	0.20	-1.1
3,729,064	+		IAI47_17580	0.20	-0.7
3,729,065	-		IAI47_17580	0.21	-0.2
3,729,065	-		IAI47_17580	0.21	+0.7
3,729,067	-		IAI47_17580	0.21	+0.8
3,729,107	+		IAI47_17580	0.27	+0.1
3,729,107	+		IAI47_17580	0.27	-0.4
3,729,107	+		IAI47_17580	0.27	-1.4
3,729,107	+		IAI47_17580	0.27	-0.1
3,729,111	+		IAI47_17580	0.28	-0.2
3,729,111	+		IAI47_17580	0.28	-1.8
3,729,111	+		IAI47_17580	0.28	-0.1
3,729,111	+		IAI47_17580	0.28	-0.5
3,729,114	+		IAI47_17580	0.28	+0.6
3,729,165	-		IAI47_17580	0.36	-2.4
3,729,223	+		IAI47_17580	0.45	-0.2
3,729,224	-		IAI47_17580	0.45	+1.5
3,729,224	-		IAI47_17580	0.45	+1.5
3,729,224	-		IAI47_17580	0.45	-0.5
3,729,224	-		IAI47_17580	0.45	-0.9
3,729,233	+		IAI47_17580	0.46	+0.1
3,729,233	+		IAI47_17580	0.46	-0.8
3,729,261	-		IAI47_17580	0.50	-3.1
3,729,261	-		IAI47_17580	0.50	-2.7
3,729,275	+		IAI47_17580	0.52	-0.0
3,729,306	-		IAI47_17580	0.57	-0.1
3,729,306	-		IAI47_17580	0.57	+0.2
3,729,366	-		IAI47_17580	0.66	-0.1
3,729,390	+		IAI47_17580	0.70	+0.5
3,729,390	+		IAI47_17580	0.70	+1.0
3,729,390	+		IAI47_17580	0.70	-0.7
3,729,391	-		IAI47_17580	0.70	-0.8
3,729,391	-		IAI47_17580	0.70	+0.2
3,729,391	-		IAI47_17580	0.70	+0.7
3,729,391	-		IAI47_17580	0.70	-1.5
3,729,420	+		IAI47_17580	0.74	+2.0
3,729,421	-		IAI47_17580	0.75	-0.0
3,729,425	-		IAI47_17580	0.75	+1.6
3,729,450	+		IAI47_17580	0.79	-0.3
3,729,451	-		IAI47_17580	0.79	-0.3
3,729,498	+		IAI47_17580	0.86	-2.1
3,729,498	+		IAI47_17580	0.86	+0.7
3,729,498	+		IAI47_17580	0.86	+0.3
3,729,498	+		IAI47_17580	0.86	-0.6
3,729,498	+		IAI47_17580	0.86	+1.1
3,729,499	-		IAI47_17580	0.86	-1.1
3,729,533	+				-0.3
3,729,534	-				+0.2
3,729,534	-				+1.1
3,729,534	-				-0.0
3,729,576	+				+0.3
3,729,576	+				-0.2
3,729,577	-				+0.4
3,729,577	-				+0.4
3,729,636	-				+0.3
3,729,645	+				+0.9
3,729,656	-				+0.4
3,729,665	+				-0.3
3,729,665	+				-0.5
3,729,665	+				+0.6
3,729,669	-				-2.9
3,729,680	+				-0.1
3,729,690	-				-0.6
3,729,695	-				+0.2
3,729,724	+				+0.0
3,729,724	+				+0.6
3,729,725	-				-0.6
3,729,726	+				+0.2
3,729,727	-				+0.9
3,729,727	-				-0.6
3,729,733	+				-0.9
3,729,733	+				+0.5
3,729,734	-				-0.5
3,729,757	-				+0.8
3,729,768	+				-0.8
3,729,769	-				-1.3
3,729,769	-				-0.3
3,729,784	+				+1.9
3,729,795	-				+0.3
3,729,801	+				+0.9
3,729,816	+				+1.0
3,729,816	+				-0.3
3,729,840	-				+0.5
3,729,864	+				+0.7
3,729,864	+				+0.3
3,729,893	+				-0.1
3,729,911	+				+0.3
3,729,912	-				-0.8
3,729,912	-				+0.0
3,729,939	+				+1.7
3,729,940	-				+0.7
3,729,940	-				+0.1
3,729,940	-				+0.1
3,729,985	+				-0.2
3,729,985	+				-0.1
3,729,985	+				+0.2
3,729,986	-				-0.3
3,729,986	-				-1.3
3,729,986	-				+0.2
3,729,988	+				+0.3
3,729,988	+				+0.4
3,729,988	+				+1.1
3,729,989	-				+0.6
3,729,989	-				+1.2
3,729,989	-				+0.9
3,730,008	+				-0.4
3,730,008	+				+0.1
3,730,008	+				-0.2
3,730,008	+				+0.2
3,730,009	-				-0.4
3,730,009	-				+0.9
3,730,009	-				+0.7
3,730,009	-				+0.2
3,730,009	-				+0.5
3,730,014	+				-0.7
3,730,014	+				+0.6
3,730,014	+				+0.2
3,730,014	+				-0.8
3,730,014	+				+0.9
3,730,015	-				+0.1
3,730,015	-				+0.8
3,730,015	-				+0.5
3,730,015	-				+0.8
3,730,015	-				+0.6
3,730,024	+				+0.1
3,730,024	+				-0.4
3,730,025	-				+0.3
3,730,025	-				-0.3
3,730,063	+				-0.1
3,730,063	+				+0.3
3,730,064	-				+0.7
3,730,270	+		IAI47_17585	0.17	-0.2
3,730,271	-		IAI47_17585	0.17	-0.4
3,730,271	-		IAI47_17585	0.17	-0.0
3,730,271	-		IAI47_17585	0.17	-0.7
3,730,277	+		IAI47_17585	0.17	-0.3
3,730,296	+		IAI47_17585	0.18	-1.1
3,730,310	+		IAI47_17585	0.19	-0.2
3,730,311	-		IAI47_17585	0.19	+0.6
3,730,341	+		IAI47_17585	0.20	+0.3
3,730,342	-		IAI47_17585	0.20	+0.1
3,730,428	+		IAI47_17585	0.24	-0.0
3,730,429	-		IAI47_17585	0.24	+0.2
3,730,429	-		IAI47_17585	0.24	-1.3
3,730,429	-		IAI47_17585	0.24	+1.1
3,730,533	+		IAI47_17585	0.28	+0.1
3,730,552	+		IAI47_17585	0.29	+0.3
3,730,552	+		IAI47_17585	0.29	+0.6
3,730,552	+		IAI47_17585	0.29	+0.8
3,730,553	-		IAI47_17585	0.29	+0.9
3,730,553	-		IAI47_17585	0.29	+1.5
3,730,553	-		IAI47_17585	0.29	-0.5
3,730,553	-		IAI47_17585	0.29	+1.1
3,730,553	-		IAI47_17585	0.29	+1.8
3,730,553	-		IAI47_17585	0.29	-0.2
3,730,553	-		IAI47_17585	0.29	-0.4
3,730,553	-		IAI47_17585	0.29	-0.5
3,730,553	-		IAI47_17585	0.29	-1.1