Experiment: PYE with Nickel (II) chloride 0.15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00752 and CCNA_00753 are separated by 137 nucleotides CCNA_00753 and CCNA_00754 are separated by 157 nucleotides
CCNA_00752: CCNA_00752 - 3-hydroxybutyryl-CoA dehydrogenase, at 810,384 to 811,262
_00752
CCNA_00753: CCNA_00753 - lysine 2,3-aminomutase, at 811,400 to 812,437
_00753
CCNA_00754: CCNA_00754 - Nodulin-21 / CCC1-related protein, at 812,595 to 813,296
_00754
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 810.466 kb on + strand at 810.504 kb on + strand, within CCNA_00752 at 810.511 kb on + strand, within CCNA_00752 at 810.511 kb on + strand, within CCNA_00752 at 810.546 kb on + strand, within CCNA_00752 at 810.546 kb on + strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.554 kb on - strand, within CCNA_00752 at 810.572 kb on - strand, within CCNA_00752 at 810.577 kb on - strand, within CCNA_00752 at 810.577 kb on - strand, within CCNA_00752 at 810.590 kb on + strand at 810.631 kb on + strand, within CCNA_00752 at 810.640 kb on + strand, within CCNA_00752 at 810.648 kb on - strand, within CCNA_00752 at 810.650 kb on + strand, within CCNA_00752 at 810.652 kb on + strand, within CCNA_00752 at 810.652 kb on + strand, within CCNA_00752 at 810.660 kb on - strand, within CCNA_00752 at 810.721 kb on - strand, within CCNA_00752 at 810.771 kb on + strand, within CCNA_00752 at 810.779 kb on - strand, within CCNA_00752 at 810.802 kb on + strand, within CCNA_00752 at 810.811 kb on + strand, within CCNA_00752 at 810.819 kb on - strand, within CCNA_00752 at 810.832 kb on - strand, within CCNA_00752 at 810.887 kb on + strand, within CCNA_00752 at 810.937 kb on + strand, within CCNA_00752 at 810.939 kb on - strand, within CCNA_00752 at 810.952 kb on - strand, within CCNA_00752 at 810.952 kb on - strand, within CCNA_00752 at 810.952 kb on - strand, within CCNA_00752 at 811.025 kb on + strand, within CCNA_00752 at 811.033 kb on - strand, within CCNA_00752 at 811.033 kb on - strand, within CCNA_00752 at 811.054 kb on - strand, within CCNA_00752 at 811.061 kb on - strand, within CCNA_00752 at 811.116 kb on - strand, within CCNA_00752 at 811.138 kb on + strand, within CCNA_00752 at 811.175 kb on + strand at 811.177 kb on - strand at 811.183 kb on - strand at 811.218 kb on + strand at 811.302 kb on + strand at 811.310 kb on - strand at 811.310 kb on - strand at 811.342 kb on + strand at 811.342 kb on + strand at 811.350 kb on - strand at 811.350 kb on - strand at 811.352 kb on + strand at 811.352 kb on + strand at 811.352 kb on + strand at 811.352 kb on + strand at 811.358 kb on + strand at 811.360 kb on - strand at 811.360 kb on - strand at 811.391 kb on - strand at 811.418 kb on + strand at 811.433 kb on + strand at 811.465 kb on + strand at 811.465 kb on + strand at 811.475 kb on + strand at 811.475 kb on + strand at 811.476 kb on + strand at 811.483 kb on - strand at 811.483 kb on - strand at 811.483 kb on - strand at 811.528 kb on - strand, within CCNA_00753 at 811.534 kb on - strand, within CCNA_00753 at 811.540 kb on - strand, within CCNA_00753 at 811.540 kb on - strand, within CCNA_00753 at 811.542 kb on + strand, within CCNA_00753 at 811.637 kb on - strand, within CCNA_00753 at 811.638 kb on + strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.646 kb on - strand, within CCNA_00753 at 811.670 kb on - strand, within CCNA_00753 at 811.694 kb on + strand, within CCNA_00753 at 811.696 kb on + strand, within CCNA_00753 at 811.702 kb on - strand, within CCNA_00753 at 811.709 kb on + strand, within CCNA_00753 at 811.725 kb on - strand, within CCNA_00753 at 811.727 kb on - strand, within CCNA_00753 at 811.746 kb on + strand, within CCNA_00753 at 811.776 kb on + strand, within CCNA_00753 at 811.818 kb on - strand, within CCNA_00753 at 811.818 kb on - strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.911 kb on + strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 811.919 kb on - strand, within CCNA_00753 at 812.002 kb on + strand, within CCNA_00753 at 812.004 kb on + strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.010 kb on - strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.033 kb on + strand, within CCNA_00753 at 812.036 kb on - strand, within CCNA_00753 at 812.041 kb on - strand, within CCNA_00753 at 812.051 kb on - strand, within CCNA_00753 at 812.065 kb on + strand, within CCNA_00753 at 812.082 kb on + strand, within CCNA_00753 at 812.085 kb on - strand, within CCNA_00753 at 812.114 kb on + strand, within CCNA_00753 at 812.122 kb on - strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.129 kb on + strand, within CCNA_00753 at 812.132 kb on - strand, within CCNA_00753 at 812.132 kb on - strand, within CCNA_00753 at 812.137 kb on - strand, within CCNA_00753 at 812.147 kb on - strand, within CCNA_00753 at 812.160 kb on + strand, within CCNA_00753 at 812.165 kb on + strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.168 kb on - strand, within CCNA_00753 at 812.173 kb on - strand, within CCNA_00753 at 812.182 kb on + strand, within CCNA_00753 at 812.182 kb on + strand, within CCNA_00753 at 812.190 kb on - strand, within CCNA_00753 at 812.190 kb on - strand, within CCNA_00753 at 812.192 kb on - strand, within CCNA_00753 at 812.197 kb on - strand, within CCNA_00753 at 812.234 kb on + strand, within CCNA_00753 at 812.243 kb on - strand, within CCNA_00753 at 812.295 kb on + strand, within CCNA_00753 at 812.313 kb on - strand, within CCNA_00753 at 812.361 kb on - strand at 812.371 kb on + strand at 812.388 kb on - strand at 812.397 kb on + strand at 812.405 kb on - strand at 812.419 kb on + strand at 812.420 kb on + strand at 812.420 kb on + strand at 812.420 kb on + strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.428 kb on - strand at 812.429 kb on + strand at 812.435 kb on + strand at 812.441 kb on + strand at 812.443 kb on - strand at 812.508 kb on - strand at 812.593 kb on + strand at 812.603 kb on - strand at 812.603 kb on - strand at 812.605 kb on + strand at 812.613 kb on - strand at 812.638 kb on + strand at 812.643 kb on + strand at 812.643 kb on + strand at 812.651 kb on - strand at 812.653 kb on + strand at 812.653 kb on + strand at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.721 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.726 kb on - strand, within CCNA_00754 at 812.732 kb on + strand, within CCNA_00754 at 812.736 kb on + strand, within CCNA_00754 at 812.736 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.743 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.744 kb on - strand, within CCNA_00754 at 812.776 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.838 kb on + strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.846 kb on - strand, within CCNA_00754 at 812.869 kb on - strand, within CCNA_00754 at 812.871 kb on - strand, within CCNA_00754 at 812.923 kb on + strand, within CCNA_00754 at 812.942 kb on + strand, within CCNA_00754 at 813.034 kb on - strand, within CCNA_00754 at 813.055 kb on - strand, within CCNA_00754 at 813.100 kb on - strand, within CCNA_00754 at 813.126 kb on + strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.154 kb on - strand, within CCNA_00754 at 813.157 kb on + strand, within CCNA_00754 at 813.178 kb on + strand, within CCNA_00754 at 813.222 kb on + strand, within CCNA_00754 at 813.281 kb on + strand at 813.291 kb on + strand at 813.291 kb on + strand at 813.300 kb on - strand at 813.313 kb on - strand at 813.317 kb on - strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.320 kb on + strand at 813.328 kb on - strand at 813.333 kb on - strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.344 kb on + strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.352 kb on - strand at 813.366 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.373 kb on + strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.381 kb on - strand at 813.386 kb on + strand at 813.427 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.15 mM remove 810,466 + +2.4 810,504 + CCNA_00752 0.14 +2.3 810,511 + CCNA_00752 0.14 +1.0 810,511 + CCNA_00752 0.14 +1.4 810,546 + CCNA_00752 0.18 +1.6 810,546 + CCNA_00752 0.18 +1.9 810,554 - CCNA_00752 0.19 +2.7 810,554 - CCNA_00752 0.19 +3.1 810,554 - CCNA_00752 0.19 +2.3 810,554 - CCNA_00752 0.19 +2.6 810,572 - CCNA_00752 0.21 +2.7 810,577 - CCNA_00752 0.22 +2.6 810,577 - CCNA_00752 0.22 +2.3 810,590 + +3.8 810,631 + CCNA_00752 0.28 +2.1 810,640 + CCNA_00752 0.29 +1.3 810,648 - CCNA_00752 0.30 +2.4 810,650 + CCNA_00752 0.30 +2.0 810,652 + CCNA_00752 0.30 +1.3 810,652 + CCNA_00752 0.30 +1.2 810,660 - CCNA_00752 0.31 +2.2 810,721 - CCNA_00752 0.38 +2.5 810,771 + CCNA_00752 0.44 +0.5 810,779 - CCNA_00752 0.45 +2.0 810,802 + CCNA_00752 0.48 +1.5 810,811 + CCNA_00752 0.49 +2.4 810,819 - CCNA_00752 0.49 +2.8 810,832 - CCNA_00752 0.51 +2.6 810,887 + CCNA_00752 0.57 +2.0 810,937 + CCNA_00752 0.63 +2.0 810,939 - CCNA_00752 0.63 +2.2 810,952 - CCNA_00752 0.65 +3.1 810,952 - CCNA_00752 0.65 +2.3 810,952 - CCNA_00752 0.65 +2.6 811,025 + CCNA_00752 0.73 +0.2 811,033 - CCNA_00752 0.74 +2.7 811,033 - CCNA_00752 0.74 +2.2 811,054 - CCNA_00752 0.76 +2.5 811,061 - CCNA_00752 0.77 +2.1 811,116 - CCNA_00752 0.83 +2.7 811,138 + CCNA_00752 0.86 +1.5 811,175 + +1.7 811,177 - +2.6 811,183 - +0.9 811,218 + +2.1 811,302 + +1.2 811,310 - +1.3 811,310 - +1.5 811,342 + +1.1 811,342 + -0.1 811,350 - +0.6 811,350 - -0.1 811,352 + +0.1 811,352 + +0.3 811,352 + -0.2 811,352 + +0.2 811,358 + +0.8 811,360 - -0.4 811,360 - +0.6 811,391 - +0.8 811,418 + -1.2 811,433 + -0.4 811,465 + -0.1 811,465 + +0.1 811,475 + -0.5 811,475 + -1.9 811,476 + -1.4 811,483 - -2.2 811,483 - -1.2 811,483 - +0.2 811,528 - CCNA_00753 0.12 -1.3 811,534 - CCNA_00753 0.13 +0.4 811,540 - CCNA_00753 0.13 -0.7 811,540 - CCNA_00753 0.13 -2.2 811,542 + CCNA_00753 0.14 -0.4 811,637 - CCNA_00753 0.23 -0.4 811,638 + CCNA_00753 0.23 -0.7 811,646 - CCNA_00753 0.24 -0.8 811,646 - CCNA_00753 0.24 -2.1 811,646 - CCNA_00753 0.24 -0.4 811,646 - CCNA_00753 0.24 -0.1 811,670 - CCNA_00753 0.26 -2.0 811,694 + CCNA_00753 0.28 -2.1 811,696 + CCNA_00753 0.29 -0.7 811,702 - CCNA_00753 0.29 -0.8 811,709 + CCNA_00753 0.30 -2.0 811,725 - CCNA_00753 0.31 -0.4 811,727 - CCNA_00753 0.32 -1.4 811,746 + CCNA_00753 0.33 -1.9 811,776 + CCNA_00753 0.36 -0.1 811,818 - CCNA_00753 0.40 -1.2 811,818 - CCNA_00753 0.40 +0.0 811,911 + CCNA_00753 0.49 +0.4 811,911 + CCNA_00753 0.49 +1.0 811,911 + CCNA_00753 0.49 -2.0 811,911 + CCNA_00753 0.49 -0.6 811,911 + CCNA_00753 0.49 -0.8 811,911 + CCNA_00753 0.49 +0.8 811,919 - CCNA_00753 0.50 -0.3 811,919 - CCNA_00753 0.50 -0.2 811,919 - CCNA_00753 0.50 -0.6 811,919 - CCNA_00753 0.50 -0.8 812,002 + CCNA_00753 0.58 +0.8 812,004 + CCNA_00753 0.58 +0.3 812,010 - CCNA_00753 0.59 +1.7 812,010 - CCNA_00753 0.59 +0.0 812,010 - CCNA_00753 0.59 -0.1 812,033 + CCNA_00753 0.61 +0.0 812,033 + CCNA_00753 0.61 -0.5 812,033 + CCNA_00753 0.61 -1.2 812,036 - CCNA_00753 0.61 -1.9 812,041 - CCNA_00753 0.62 -1.7 812,051 - CCNA_00753 0.63 -0.8 812,065 + CCNA_00753 0.64 -0.6 812,082 + CCNA_00753 0.66 -1.0 812,085 - CCNA_00753 0.66 -1.9 812,114 + CCNA_00753 0.69 +0.5 812,122 - CCNA_00753 0.70 +0.1 812,129 + CCNA_00753 0.70 +0.9 812,129 + CCNA_00753 0.70 -0.6 812,129 + CCNA_00753 0.70 -1.2 812,129 + CCNA_00753 0.70 +0.3 812,132 - CCNA_00753 0.71 -0.1 812,132 - CCNA_00753 0.71 -1.1 812,137 - CCNA_00753 0.71 -1.5 812,147 - CCNA_00753 0.72 -0.9 812,160 + CCNA_00753 0.73 -0.5 812,165 + CCNA_00753 0.74 -1.2 812,168 - CCNA_00753 0.74 -1.6 812,168 - CCNA_00753 0.74 -0.3 812,168 - CCNA_00753 0.74 +0.6 812,173 - CCNA_00753 0.74 -0.4 812,182 + CCNA_00753 0.75 -0.6 812,182 + CCNA_00753 0.75 -0.2 812,190 - CCNA_00753 0.76 +1.4 812,190 - CCNA_00753 0.76 -1.4 812,192 - CCNA_00753 0.76 +0.0 812,197 - CCNA_00753 0.77 -0.9 812,234 + CCNA_00753 0.80 -1.4 812,243 - CCNA_00753 0.81 -0.8 812,295 + CCNA_00753 0.86 -1.1 812,313 - CCNA_00753 0.88 -2.0 812,361 - +0.2 812,371 + -0.4 812,388 - -1.1 812,397 + +1.0 812,405 - +1.1 812,419 + -0.5 812,420 + -0.5 812,420 + -0.5 812,420 + +0.5 812,428 - -0.4 812,428 - +0.4 812,428 - -0.1 812,428 - -0.1 812,428 - +0.5 812,428 - -1.6 812,429 + +1.4 812,435 + +0.1 812,441 + +1.4 812,443 - +1.0 812,508 - +0.2 812,593 + +0.5 812,603 - -0.5 812,603 - +0.1 812,605 + -0.1 812,613 - -0.2 812,638 + -0.9 812,643 + -0.5 812,643 + +1.2 812,651 - +0.0 812,653 + -1.0 812,653 + -0.8 812,721 - CCNA_00754 0.18 +0.6 812,721 - CCNA_00754 0.18 +0.2 812,721 - CCNA_00754 0.18 -0.3 812,726 - CCNA_00754 0.19 -0.3 812,726 - CCNA_00754 0.19 -0.6 812,726 - CCNA_00754 0.19 +0.5 812,726 - CCNA_00754 0.19 -1.3 812,732 + CCNA_00754 0.20 -0.4 812,736 + CCNA_00754 0.20 -0.6 812,736 - CCNA_00754 0.20 -0.4 812,743 - CCNA_00754 0.21 +0.5 812,743 - CCNA_00754 0.21 -1.3 812,744 - CCNA_00754 0.21 +0.4 812,744 - CCNA_00754 0.21 +1.0 812,776 + CCNA_00754 0.26 +2.2 812,838 + CCNA_00754 0.35 +0.1 812,838 + CCNA_00754 0.35 +2.8 812,838 + CCNA_00754 0.35 +1.0 812,838 + CCNA_00754 0.35 +1.8 812,846 - CCNA_00754 0.36 -0.2 812,846 - CCNA_00754 0.36 +0.0 812,846 - CCNA_00754 0.36 -0.0 812,846 - CCNA_00754 0.36 -1.1 812,846 - CCNA_00754 0.36 -0.7 812,846 - CCNA_00754 0.36 +0.4 812,869 - CCNA_00754 0.39 -0.0 812,871 - CCNA_00754 0.39 -1.2 812,923 + CCNA_00754 0.47 +0.3 812,942 + CCNA_00754 0.49 +2.1 813,034 - CCNA_00754 0.63 +1.2 813,055 - CCNA_00754 0.66 +0.3 813,100 - CCNA_00754 0.72 +0.1 813,126 + CCNA_00754 0.76 -2.8 813,154 - CCNA_00754 0.80 -0.0 813,154 - CCNA_00754 0.80 +1.0 813,157 + CCNA_00754 0.80 +0.6 813,178 + CCNA_00754 0.83 +1.8 813,222 + CCNA_00754 0.89 -0.2 813,281 + -0.1 813,291 + -0.8 813,291 + +1.1 813,300 - +0.5 813,313 - -0.4 813,317 - +0.1 813,320 + -1.4 813,320 + +0.4 813,320 + -1.4 813,328 - -0.0 813,333 - -1.7 813,344 + +0.6 813,344 + +1.4 813,344 + -1.4 813,344 + +0.5 813,344 + +0.5 813,344 + -0.4 813,344 + -1.0 813,344 + -0.5 813,344 + -0.8 813,344 + -1.1 813,344 + +1.3 813,344 + -0.1 813,352 - -1.6 813,352 - +0.7 813,352 - +1.1 813,352 - -0.4 813,352 - -0.9 813,352 - +2.0 813,352 - +0.4 813,352 - +0.3 813,366 + +1.3 813,373 + +0.6 813,373 + -0.1 813,373 + +0.5 813,373 + -0.3 813,373 + +2.0 813,373 + -0.4 813,373 + -1.8 813,373 + +0.4 813,373 + -0.3 813,373 + -0.5 813,373 + +0.4 813,373 + -1.3 813,373 + -0.4 813,373 + -0.5 813,373 + +1.7 813,373 + -0.4 813,373 + -0.6 813,381 - -0.7 813,381 - -1.3 813,381 - -0.2 813,381 - -2.2 813,381 - +0.3 813,381 - -1.8 813,381 - -0.0 813,381 - -0.3 813,381 - -0.3 813,381 - -0.1 813,381 - +1.5 813,381 - +0.4 813,381 - +0.1 813,381 - +1.3 813,386 + -1.2 813,427 + -1.1
Or see this region's nucleotide sequence