Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS11205

Experiment: Recovery broth with Vancomycin from Streptomyces orientalis 7e-05 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS11195 and BBR_RS11200 are separated by 151 nucleotidesBBR_RS11200 and BBR_RS11205 are separated by 123 nucleotidesBBR_RS11205 and BBR_RS11210 are separated by 257 nucleotides BBR_RS11195: BBR_RS11195 - DNA polymerase III subunit delta', at 256,662 to 257,813 _RS11195 BBR_RS11200: BBR_RS11200 - LacI family transcriptional regulator, at 257,965 to 258,594 _RS11200 BBR_RS11205: BBR_RS11205 - HPr family phosphocarrier protein, at 258,718 to 258,978 _RS11205 BBR_RS11210: BBR_RS11210 - phosphoenolpyruvate--protein phosphotransferase, at 259,236 to 260,885 _RS11210 Position (kb) 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 257.821 kb on - strandat 257.822 kb on - strandat 257.822 kb on - strandat 257.823 kb on + strandat 257.843 kb on + strandat 257.855 kb on + strandat 257.855 kb on + strandat 257.855 kb on + strandat 257.855 kb on + strandat 257.861 kb on - strandat 257.863 kb on - strandat 257.878 kb on + strandat 257.886 kb on - strandat 257.886 kb on - strandat 257.886 kb on - strandat 257.902 kb on + strandat 257.902 kb on + strandat 257.902 kb on + strandat 257.902 kb on + strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.910 kb on - strandat 257.912 kb on + strandat 257.912 kb on + strandat 257.917 kb on + strandat 257.917 kb on + strandat 257.917 kb on + strandat 257.941 kb on - strandat 257.951 kb on - strandat 257.951 kb on - strandat 257.961 kb on - strandat 257.990 kb on - strandat 258.026 kb on + strandat 258.026 kb on + strandat 258.031 kb on + strand, within BBR_RS11200at 258.056 kb on - strand, within BBR_RS11200at 258.076 kb on - strand, within BBR_RS11200at 258.076 kb on - strand, within BBR_RS11200at 258.083 kb on + strand, within BBR_RS11200at 258.088 kb on + strand, within BBR_RS11200at 258.091 kb on - strand, within BBR_RS11200at 258.091 kb on - strand, within BBR_RS11200at 258.096 kb on - strand, within BBR_RS11200at 258.118 kb on - strand, within BBR_RS11200at 258.118 kb on - strand, within BBR_RS11200at 258.121 kb on - strand, within BBR_RS11200at 258.128 kb on + strand, within BBR_RS11200at 258.128 kb on + strand, within BBR_RS11200at 258.141 kb on - strand, within BBR_RS11200at 258.151 kb on + strand, within BBR_RS11200at 258.159 kb on - strand, within BBR_RS11200at 258.165 kb on + strand, within BBR_RS11200at 258.165 kb on + strand, within BBR_RS11200at 258.178 kb on + strand, within BBR_RS11200at 258.178 kb on + strand, within BBR_RS11200at 258.178 kb on + strand, within BBR_RS11200at 258.183 kb on + strand, within BBR_RS11200at 258.186 kb on - strand, within BBR_RS11200at 258.186 kb on - strand, within BBR_RS11200at 258.213 kb on + strand, within BBR_RS11200at 258.216 kb on + strand, within BBR_RS11200at 258.216 kb on + strand, within BBR_RS11200at 258.224 kb on - strand, within BBR_RS11200at 258.235 kb on + strand, within BBR_RS11200at 258.243 kb on - strand, within BBR_RS11200at 258.261 kb on + strand, within BBR_RS11200at 258.273 kb on + strand, within BBR_RS11200at 258.294 kb on + strand, within BBR_RS11200at 258.318 kb on + strand, within BBR_RS11200at 258.318 kb on + strand, within BBR_RS11200at 258.318 kb on + strand, within BBR_RS11200at 258.318 kb on + strand, within BBR_RS11200at 258.318 kb on + strand, within BBR_RS11200at 258.318 kb on + strand, within BBR_RS11200at 258.326 kb on - strand, within BBR_RS11200at 258.326 kb on - strand, within BBR_RS11200at 258.326 kb on - strand, within BBR_RS11200at 258.326 kb on - strand, within BBR_RS11200at 258.326 kb on - strand, within BBR_RS11200at 258.359 kb on - strand, within BBR_RS11200at 258.377 kb on - strand, within BBR_RS11200at 258.391 kb on - strand, within BBR_RS11200at 258.391 kb on - strand, within BBR_RS11200at 258.391 kb on - strand, within BBR_RS11200at 258.391 kb on - strand, within BBR_RS11200at 258.397 kb on + strand, within BBR_RS11200at 258.403 kb on - strand, within BBR_RS11200at 258.403 kb on - strand, within BBR_RS11200at 258.403 kb on - strand, within BBR_RS11200at 258.403 kb on - strand, within BBR_RS11200at 258.403 kb on - strand, within BBR_RS11200at 258.403 kb on - strand, within BBR_RS11200at 258.432 kb on + strand, within BBR_RS11200at 258.432 kb on + strand, within BBR_RS11200at 258.432 kb on + strand, within BBR_RS11200at 258.440 kb on - strand, within BBR_RS11200at 258.465 kb on + strand, within BBR_RS11200at 258.503 kb on + strand, within BBR_RS11200at 258.508 kb on + strand, within BBR_RS11200at 258.516 kb on - strand, within BBR_RS11200at 258.516 kb on - strand, within BBR_RS11200at 258.540 kb on + strandat 258.553 kb on + strandat 258.571 kb on - strandat 258.571 kb on - strandat 258.598 kb on - strandat 258.653 kb on + strandat 258.745 kb on - strand, within BBR_RS11205at 258.797 kb on + strand, within BBR_RS11205at 258.797 kb on + strand, within BBR_RS11205at 258.805 kb on - strand, within BBR_RS11205at 258.805 kb on - strand, within BBR_RS11205at 258.912 kb on - strand, within BBR_RS11205at 258.961 kb on - strandat 258.983 kb on - strandat 258.983 kb on - strandat 258.997 kb on - strandat 259.045 kb on - strandat 259.045 kb on - strandat 259.045 kb on - strandat 259.046 kb on + strandat 259.052 kb on - strandat 259.087 kb on + strandat 259.101 kb on - strandat 259.162 kb on + strandat 259.170 kb on + strandat 259.170 kb on + strandat 259.183 kb on + strandat 259.211 kb on - strandat 259.213 kb on - strandat 259.214 kb on - strandat 259.214 kb on - strandat 259.231 kb on + strandat 259.347 kb on - strandat 259.481 kb on - strand, within BBR_RS11210at 259.523 kb on + strand, within BBR_RS11210at 259.567 kb on - strand, within BBR_RS11210at 259.575 kb on + strand, within BBR_RS11210at 259.644 kb on - strand, within BBR_RS11210at 259.644 kb on - strand, within BBR_RS11210at 259.644 kb on - strand, within BBR_RS11210at 259.657 kb on - strand, within BBR_RS11210at 259.667 kb on - strand, within BBR_RS11210at 259.669 kb on - strand, within BBR_RS11210at 259.767 kb on + strand, within BBR_RS11210at 259.768 kb on - strand, within BBR_RS11210at 259.768 kb on - strand, within BBR_RS11210at 259.869 kb on + strand, within BBR_RS11210at 259.874 kb on + strand, within BBR_RS11210at 259.874 kb on + strand, within BBR_RS11210at 259.890 kb on - strand, within BBR_RS11210at 259.897 kb on - strand, within BBR_RS11210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Vancomycin from Streptomyces orientalis 7e-05 mM
remove
257,821 - -0.7
257,822 - -0.1
257,822 - -1.4
257,823 + -0.1
257,843 + +0.4
257,855 + +0.3
257,855 + -0.7
257,855 + -1.1
257,855 + -0.1
257,861 - -0.4
257,863 - -0.7
257,878 + -0.1
257,886 - +0.3
257,886 - +0.6
257,886 - +0.0
257,902 + +0.1
257,902 + -0.4
257,902 + -1.9
257,902 + +0.6
257,910 - -0.7
257,910 - -0.5
257,910 - -0.3
257,910 - -0.3
257,910 - +0.8
257,910 - -0.2
257,910 - +0.3
257,910 - +0.2
257,910 - +0.0
257,910 - -0.2
257,910 - +0.1
257,912 + -0.6
257,912 + -0.1
257,917 + +0.1
257,917 + -0.4
257,917 + -0.0
257,941 - -0.3
257,951 - -0.4
257,951 - +0.5
257,961 - +1.6
257,990 - -0.4
258,026 + -0.3
258,026 + -0.4
258,031 + BBR_RS11200 0.10 +0.4
258,056 - BBR_RS11200 0.14 +0.2
258,076 - BBR_RS11200 0.18 +0.3
258,076 - BBR_RS11200 0.18 -0.3
258,083 + BBR_RS11200 0.19 -1.4
258,088 + BBR_RS11200 0.20 -1.2
258,091 - BBR_RS11200 0.20 +0.3
258,091 - BBR_RS11200 0.20 +0.7
258,096 - BBR_RS11200 0.21 -0.4
258,118 - BBR_RS11200 0.24 -0.3
258,118 - BBR_RS11200 0.24 -1.5
258,121 - BBR_RS11200 0.25 -0.1
258,128 + BBR_RS11200 0.26 -0.3
258,128 + BBR_RS11200 0.26 -0.0
258,141 - BBR_RS11200 0.28 -0.1
258,151 + BBR_RS11200 0.30 -0.9
258,159 - BBR_RS11200 0.31 +0.4
258,165 + BBR_RS11200 0.32 +0.3
258,165 + BBR_RS11200 0.32 -0.3
258,178 + BBR_RS11200 0.34 +0.4
258,178 + BBR_RS11200 0.34 +0.1
258,178 + BBR_RS11200 0.34 -0.2
258,183 + BBR_RS11200 0.35 +1.1
258,186 - BBR_RS11200 0.35 +0.0
258,186 - BBR_RS11200 0.35 -0.0
258,213 + BBR_RS11200 0.39 +0.7
258,216 + BBR_RS11200 0.40 -0.5
258,216 + BBR_RS11200 0.40 -0.7
258,224 - BBR_RS11200 0.41 -0.5
258,235 + BBR_RS11200 0.43 -0.4
258,243 - BBR_RS11200 0.44 +1.9
258,261 + BBR_RS11200 0.47 +1.5
258,273 + BBR_RS11200 0.49 -0.9
258,294 + BBR_RS11200 0.52 +1.8
258,318 + BBR_RS11200 0.56 +0.6
258,318 + BBR_RS11200 0.56 +0.8
258,318 + BBR_RS11200 0.56 -1.5
258,318 + BBR_RS11200 0.56 -1.6
258,318 + BBR_RS11200 0.56 +0.2
258,318 + BBR_RS11200 0.56 -0.3
258,326 - BBR_RS11200 0.57 -1.1
258,326 - BBR_RS11200 0.57 +0.1
258,326 - BBR_RS11200 0.57 +0.6
258,326 - BBR_RS11200 0.57 -1.1
258,326 - BBR_RS11200 0.57 +0.6
258,359 - BBR_RS11200 0.63 -0.1
258,377 - BBR_RS11200 0.65 +0.2
258,391 - BBR_RS11200 0.68 -0.4
258,391 - BBR_RS11200 0.68 -0.4
258,391 - BBR_RS11200 0.68 -0.6
258,391 - BBR_RS11200 0.68 -0.7
258,397 + BBR_RS11200 0.69 -0.6
258,403 - BBR_RS11200 0.70 +0.4
258,403 - BBR_RS11200 0.70 -0.0
258,403 - BBR_RS11200 0.70 +0.1
258,403 - BBR_RS11200 0.70 +0.1
258,403 - BBR_RS11200 0.70 -2.1
258,403 - BBR_RS11200 0.70 -0.1
258,432 + BBR_RS11200 0.74 +0.2
258,432 + BBR_RS11200 0.74 -0.1
258,432 + BBR_RS11200 0.74 -0.5
258,440 - BBR_RS11200 0.75 +0.8
258,465 + BBR_RS11200 0.79 -0.7
258,503 + BBR_RS11200 0.85 -0.2
258,508 + BBR_RS11200 0.86 -0.4
258,516 - BBR_RS11200 0.87 +0.4
258,516 - BBR_RS11200 0.87 -0.3
258,540 + +0.5
258,553 + +0.1
258,571 - +0.1
258,571 - +0.6
258,598 - -0.5
258,653 + +0.8
258,745 - BBR_RS11205 0.10 -0.2
258,797 + BBR_RS11205 0.30 -1.0
258,797 + BBR_RS11205 0.30 -0.3
258,805 - BBR_RS11205 0.33 -0.2
258,805 - BBR_RS11205 0.33 +0.1
258,912 - BBR_RS11205 0.74 -0.3
258,961 - -0.0
258,983 - -0.9
258,983 - -0.1
258,997 - +0.2
259,045 - -0.6
259,045 - -0.4
259,045 - -0.6
259,046 + -0.3
259,052 - -0.3
259,087 + +0.3
259,101 - +0.0
259,162 + -0.3
259,170 + +0.4
259,170 + +0.3
259,183 + -0.3
259,211 - +0.7
259,213 - -0.2
259,214 - -1.0
259,214 - +0.1
259,231 + -0.5
259,347 - +0.5
259,481 - BBR_RS11210 0.15 +1.3
259,523 + BBR_RS11210 0.17 -0.1
259,567 - BBR_RS11210 0.20 -1.3
259,575 + BBR_RS11210 0.21 -0.0
259,644 - BBR_RS11210 0.25 +1.1
259,644 - BBR_RS11210 0.25 -0.6
259,644 - BBR_RS11210 0.25 -0.3
259,657 - BBR_RS11210 0.26 -0.0
259,667 - BBR_RS11210 0.26 -0.4
259,669 - BBR_RS11210 0.26 +1.3
259,767 + BBR_RS11210 0.32 -0.5
259,768 - BBR_RS11210 0.32 +0.6
259,768 - BBR_RS11210 0.32 +0.2
259,869 + BBR_RS11210 0.38 -0.1
259,874 + BBR_RS11210 0.39 +0.0
259,874 + BBR_RS11210 0.39 -0.5
259,890 - BBR_RS11210 0.40 -0.7
259,897 - BBR_RS11210 0.40 -0.1

Or see this region's nucleotide sequence