Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29310

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29305 and AO356_29310 are separated by 14 nucleotidesAO356_29310 and AO356_29315 are separated by 79 nucleotides AO356_29305: AO356_29305 - monooxygenase, at 6,815,027 to 6,816,376 _29305 AO356_29310: AO356_29310 - aliphatic sulfonate ABC transporter substrate-binding protein, at 6,816,391 to 6,817,401 _29310 AO356_29315: AO356_29315 - acyl-CoA dehydrogenase, at 6,817,481 to 6,818,668 _29315 Position (kb) 6816 6817 6818Strain fitness (log2 ratio) -2 -1 0 1 2at 6815.765 kb on + strand, within AO356_29305at 6815.765 kb on + strand, within AO356_29305at 6815.766 kb on - strand, within AO356_29305at 6816.218 kb on + strand, within AO356_29305at 6816.218 kb on + strand, within AO356_29305at 6816.219 kb on - strand, within AO356_29305at 6816.219 kb on - strand, within AO356_29305at 6816.219 kb on - strand, within AO356_29305at 6816.275 kb on + strandat 6816.303 kb on + strandat 6816.604 kb on + strand, within AO356_29310at 6816.838 kb on + strand, within AO356_29310at 6816.985 kb on + strand, within AO356_29310at 6816.986 kb on - strand, within AO356_29310at 6816.986 kb on - strand, within AO356_29310at 6816.993 kb on - strand, within AO356_29310at 6817.052 kb on - strand, within AO356_29310at 6817.066 kb on + strand, within AO356_29310at 6817.067 kb on - strand, within AO356_29310at 6817.067 kb on - strand, within AO356_29310at 6817.129 kb on + strand, within AO356_29310at 6817.129 kb on + strand, within AO356_29310at 6817.130 kb on - strand, within AO356_29310at 6817.130 kb on - strand, within AO356_29310at 6817.131 kb on + strand, within AO356_29310at 6817.240 kb on + strand, within AO356_29310at 6817.240 kb on + strand, within AO356_29310at 6817.240 kb on + strand, within AO356_29310at 6817.241 kb on - strand, within AO356_29310at 6817.241 kb on - strand, within AO356_29310at 6817.241 kb on - strand, within AO356_29310at 6817.590 kb on - strandat 6817.973 kb on + strand, within AO356_29315at 6817.974 kb on - strand, within AO356_29315

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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6,815,765 + AO356_29305 0.55 -1.0
6,815,765 + AO356_29305 0.55 +1.0
6,815,766 - AO356_29305 0.55 -0.2
6,816,218 + AO356_29305 0.88 +2.0
6,816,218 + AO356_29305 0.88 +2.5
6,816,219 - AO356_29305 0.88 -0.4
6,816,219 - AO356_29305 0.88 +0.1
6,816,219 - AO356_29305 0.88 +0.6
6,816,275 + -2.6
6,816,303 + -0.0
6,816,604 + AO356_29310 0.21 -1.0
6,816,838 + AO356_29310 0.44 -0.6
6,816,985 + AO356_29310 0.59 +1.3
6,816,986 - AO356_29310 0.59 +1.6
6,816,986 - AO356_29310 0.59 +0.2
6,816,993 - AO356_29310 0.60 -1.7
6,817,052 - AO356_29310 0.65 +0.2
6,817,066 + AO356_29310 0.67 +2.5
6,817,067 - AO356_29310 0.67 -1.0
6,817,067 - AO356_29310 0.67 +1.5
6,817,129 + AO356_29310 0.73 -0.4
6,817,129 + AO356_29310 0.73 -1.0
6,817,130 - AO356_29310 0.73 -1.0
6,817,130 - AO356_29310 0.73 +0.7
6,817,131 + AO356_29310 0.73 -0.0
6,817,240 + AO356_29310 0.84 +0.6
6,817,240 + AO356_29310 0.84 +1.0
6,817,240 + AO356_29310 0.84 +0.3
6,817,241 - AO356_29310 0.84 -0.0
6,817,241 - AO356_29310 0.84 -1.6
6,817,241 - AO356_29310 0.84 +0.3
6,817,590 - -1.0
6,817,973 + AO356_29315 0.41 -2.0
6,817,974 - AO356_29315 0.41 -2.0

Or see this region's nucleotide sequence