Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29095

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29085 and AO356_29090 are separated by 20 nucleotidesAO356_29090 and AO356_29095 overlap by 4 nucleotidesAO356_29095 and AO356_29100 overlap by 14 nucleotidesAO356_29100 and AO356_29105 overlap by 10 nucleotides AO356_29085: AO356_29085 - LysR family transcriptional regulator, at 6,763,056 to 6,763,982 _29085 AO356_29090: AO356_29090 - GntR family transcriptional regulator, at 6,764,003 to 6,764,734 _29090 AO356_29095: AO356_29095 - cyclase, at 6,764,731 to 6,765,516 _29095 AO356_29100: AO356_29100 - epimerase, at 6,765,503 to 6,766,510 _29100 AO356_29105: AO356_29105 - fumarylacetoacetate hydrolase, at 6,766,501 to 6,767,493 _29105 Position (kb) 6764 6765 6766Strain fitness (log2 ratio) -1 0 1at 6763.739 kb on + strand, within AO356_29085at 6763.739 kb on + strand, within AO356_29085at 6763.740 kb on - strand, within AO356_29085at 6764.006 kb on + strandat 6764.037 kb on + strandat 6764.241 kb on + strand, within AO356_29090at 6764.939 kb on + strand, within AO356_29095at 6765.005 kb on + strand, within AO356_29095at 6765.006 kb on - strand, within AO356_29095at 6765.006 kb on - strand, within AO356_29095at 6765.013 kb on - strand, within AO356_29095at 6765.013 kb on - strand, within AO356_29095at 6765.276 kb on - strand, within AO356_29095at 6765.294 kb on + strand, within AO356_29095at 6765.295 kb on - strand, within AO356_29095at 6765.301 kb on - strand, within AO356_29095at 6765.458 kb on + strandat 6765.587 kb on + strandat 6766.078 kb on - strand, within AO356_29100at 6766.246 kb on - strand, within AO356_29100

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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6,763,739 + AO356_29085 0.74 -1.0
6,763,739 + AO356_29085 0.74 +1.3
6,763,740 - AO356_29085 0.74 +0.7
6,764,006 + +1.7
6,764,037 + -0.4
6,764,241 + AO356_29090 0.33 -0.6
6,764,939 + AO356_29095 0.26 +0.9
6,765,005 + AO356_29095 0.35 +0.9
6,765,006 - AO356_29095 0.35 +1.6
6,765,006 - AO356_29095 0.35 -1.0
6,765,013 - AO356_29095 0.36 +1.0
6,765,013 - AO356_29095 0.36 +1.0
6,765,276 - AO356_29095 0.69 +1.4
6,765,294 + AO356_29095 0.72 -1.0
6,765,295 - AO356_29095 0.72 -0.4
6,765,301 - AO356_29095 0.73 +0.6
6,765,458 + -1.7
6,765,587 + -0.0
6,766,078 - AO356_29100 0.57 +0.5
6,766,246 - AO356_29100 0.74 -0.2

Or see this region's nucleotide sequence