Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26950

Experiment: KB-half, Pseudo5 supernatant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_26945 and AO356_26950 are separated by 166 nucleotidesAO356_26950 and AO356_26955 overlap by 4 nucleotides AO356_26945: AO356_26945 - hypothetical protein, at 6,134,580 to 6,135,191 _26945 AO356_26950: AO356_26950 - ATP-dependent DNA ligase, at 6,135,358 to 6,137,970 _26950 AO356_26955: AO356_26955 - carboxylate--amine ligase, at 6,137,967 to 6,139,130 _26955 Position (kb) 6135 6136 6137 6138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6134.501 kb on - strandat 6134.501 kb on - strandat 6134.667 kb on + strand, within AO356_26945at 6134.809 kb on - strand, within AO356_26945at 6134.916 kb on + strand, within AO356_26945at 6134.916 kb on + strand, within AO356_26945at 6134.917 kb on - strand, within AO356_26945at 6134.917 kb on - strand, within AO356_26945at 6134.917 kb on - strand, within AO356_26945at 6134.917 kb on - strand, within AO356_26945at 6134.917 kb on - strand, within AO356_26945at 6134.919 kb on - strand, within AO356_26945at 6135.075 kb on + strand, within AO356_26945at 6135.076 kb on - strand, within AO356_26945at 6135.110 kb on - strand, within AO356_26945at 6135.153 kb on + strandat 6135.168 kb on + strandat 6135.189 kb on + strandat 6135.287 kb on - strandat 6135.360 kb on - strandat 6135.360 kb on - strandat 6135.402 kb on + strandat 6135.402 kb on + strandat 6135.605 kb on + strandat 6135.799 kb on + strand, within AO356_26950at 6135.799 kb on + strand, within AO356_26950at 6135.800 kb on - strand, within AO356_26950at 6136.160 kb on + strand, within AO356_26950at 6136.160 kb on + strand, within AO356_26950at 6136.160 kb on + strand, within AO356_26950at 6136.161 kb on - strand, within AO356_26950at 6136.161 kb on - strand, within AO356_26950at 6136.602 kb on + strand, within AO356_26950at 6136.763 kb on + strand, within AO356_26950at 6136.763 kb on + strand, within AO356_26950at 6136.763 kb on + strand, within AO356_26950at 6136.763 kb on + strand, within AO356_26950at 6136.764 kb on - strand, within AO356_26950at 6136.764 kb on - strand, within AO356_26950at 6136.764 kb on - strand, within AO356_26950at 6136.822 kb on + strand, within AO356_26950at 6136.956 kb on - strand, within AO356_26950at 6136.973 kb on + strand, within AO356_26950at 6136.973 kb on + strand, within AO356_26950at 6136.973 kb on + strand, within AO356_26950at 6136.974 kb on - strand, within AO356_26950at 6136.974 kb on - strand, within AO356_26950at 6137.219 kb on + strand, within AO356_26950at 6137.822 kb on + strandat 6137.823 kb on - strandat 6138.474 kb on + strand, within AO356_26955at 6138.474 kb on + strand, within AO356_26955at 6138.475 kb on - strand, within AO356_26955at 6138.475 kb on - strand, within AO356_26955at 6138.632 kb on - strand, within AO356_26955at 6138.787 kb on + strand, within AO356_26955at 6138.788 kb on - strand, within AO356_26955at 6138.929 kb on - strand, within AO356_26955

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
remove
6,134,501 - -0.2
6,134,501 - -0.0
6,134,667 + AO356_26945 0.14 -0.2
6,134,809 - AO356_26945 0.37 -0.0
6,134,916 + AO356_26945 0.55 -0.0
6,134,916 + AO356_26945 0.55 -0.4
6,134,917 - AO356_26945 0.55 +0.4
6,134,917 - AO356_26945 0.55 -0.3
6,134,917 - AO356_26945 0.55 -0.3
6,134,917 - AO356_26945 0.55 -1.0
6,134,917 - AO356_26945 0.55 +0.6
6,134,919 - AO356_26945 0.55 -0.0
6,135,075 + AO356_26945 0.81 -0.4
6,135,076 - AO356_26945 0.81 +1.8
6,135,110 - AO356_26945 0.87 +0.3
6,135,153 + -0.0
6,135,168 + +0.6
6,135,189 + -3.3
6,135,287 - +0.3
6,135,360 - +0.9
6,135,360 - -0.0
6,135,402 + +0.2
6,135,402 + -2.0
6,135,605 + +0.6
6,135,799 + AO356_26950 0.17 -1.0
6,135,799 + AO356_26950 0.17 -0.8
6,135,800 - AO356_26950 0.17 +0.6
6,136,160 + AO356_26950 0.31 +0.6
6,136,160 + AO356_26950 0.31 -0.4
6,136,160 + AO356_26950 0.31 +2.0
6,136,161 - AO356_26950 0.31 +0.1
6,136,161 - AO356_26950 0.31 -2.0
6,136,602 + AO356_26950 0.48 -0.4
6,136,763 + AO356_26950 0.54 +1.1
6,136,763 + AO356_26950 0.54 +0.6
6,136,763 + AO356_26950 0.54 +0.3
6,136,763 + AO356_26950 0.54 -2.0
6,136,764 - AO356_26950 0.54 +1.2
6,136,764 - AO356_26950 0.54 +1.0
6,136,764 - AO356_26950 0.54 +0.4
6,136,822 + AO356_26950 0.56 +0.3
6,136,956 - AO356_26950 0.61 +1.0
6,136,973 + AO356_26950 0.62 +1.8
6,136,973 + AO356_26950 0.62 -1.0
6,136,973 + AO356_26950 0.62 +0.3
6,136,974 - AO356_26950 0.62 +1.3
6,136,974 - AO356_26950 0.62 +0.8
6,137,219 + AO356_26950 0.71 -0.3
6,137,822 + +1.3
6,137,823 - +2.6
6,138,474 + AO356_26955 0.44 -1.0
6,138,474 + AO356_26955 0.44 -2.0
6,138,475 - AO356_26955 0.44 +1.6
6,138,475 - AO356_26955 0.44 +0.3
6,138,632 - AO356_26955 0.57 -0.0
6,138,787 + AO356_26955 0.70 +0.6
6,138,788 - AO356_26955 0.71 -0.8
6,138,929 - AO356_26955 0.83 -0.5

Or see this region's nucleotide sequence