Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26345

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26340 and AO356_26345 are separated by 16 nucleotidesAO356_26345 and AO356_26350 are separated by 16 nucleotides AO356_26340: AO356_26340 - AMP-binding protein, at 5,965,827 to 5,967,491 _26340 AO356_26345: AO356_26345 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 5,967,508 to 5,968,269 _26345 AO356_26350: AO356_26350 - acetyl-CoA acetyltransferase, at 5,968,286 to 5,969,473 _26350 Position (kb) 5967 5968 5969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5966.562 kb on + strand, within AO356_26340at 5966.562 kb on + strand, within AO356_26340at 5966.563 kb on - strand, within AO356_26340at 5966.563 kb on - strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.610 kb on + strand, within AO356_26340at 5966.611 kb on - strand, within AO356_26340at 5966.611 kb on - strand, within AO356_26340at 5966.658 kb on + strand, within AO356_26340at 5966.658 kb on + strand, within AO356_26340at 5966.658 kb on + strand, within AO356_26340at 5966.745 kb on - strand, within AO356_26340at 5966.745 kb on - strand, within AO356_26340at 5967.073 kb on - strand, within AO356_26340at 5967.075 kb on + strand, within AO356_26340at 5967.075 kb on + strand, within AO356_26340at 5967.076 kb on - strand, within AO356_26340at 5967.076 kb on - strand, within AO356_26340at 5967.364 kb on - strandat 5967.428 kb on + strandat 5967.807 kb on + strand, within AO356_26345at 5967.807 kb on + strand, within AO356_26345at 5967.808 kb on - strand, within AO356_26345at 5967.808 kb on - strand, within AO356_26345at 5967.858 kb on + strand, within AO356_26345at 5967.936 kb on + strand, within AO356_26345at 5967.936 kb on + strand, within AO356_26345at 5967.937 kb on - strand, within AO356_26345at 5967.937 kb on - strand, within AO356_26345at 5968.197 kb on + strandat 5968.198 kb on - strandat 5968.267 kb on + strandat 5968.267 kb on + strandat 5968.267 kb on + strandat 5968.268 kb on - strandat 5968.271 kb on + strandat 5968.271 kb on + strandat 5968.271 kb on + strandat 5968.271 kb on + strandat 5968.272 kb on - strandat 5968.300 kb on + strandat 5968.301 kb on - strandat 5968.301 kb on - strandat 5968.301 kb on - strandat 5968.301 kb on - strandat 5968.658 kb on + strand, within AO356_26350at 5968.746 kb on - strand, within AO356_26350at 5968.746 kb on - strand, within AO356_26350

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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5,966,562 + AO356_26340 0.44 -0.1
5,966,562 + AO356_26340 0.44 +0.2
5,966,563 - AO356_26340 0.44 -1.1
5,966,563 - AO356_26340 0.44 -0.1
5,966,610 + AO356_26340 0.47 -1.1
5,966,610 + AO356_26340 0.47 +0.2
5,966,610 + AO356_26340 0.47 +0.4
5,966,610 + AO356_26340 0.47 -1.1
5,966,611 - AO356_26340 0.47 +0.7
5,966,611 - AO356_26340 0.47 -1.7
5,966,658 + AO356_26340 0.50 +0.9
5,966,658 + AO356_26340 0.50 +0.2
5,966,658 + AO356_26340 0.50 -1.5
5,966,745 - AO356_26340 0.55 -2.1
5,966,745 - AO356_26340 0.55 +1.1
5,967,073 - AO356_26340 0.75 +1.2
5,967,075 + AO356_26340 0.75 +0.7
5,967,075 + AO356_26340 0.75 +0.4
5,967,076 - AO356_26340 0.75 -1.1
5,967,076 - AO356_26340 0.75 +0.2
5,967,364 - -1.1
5,967,428 + -1.1
5,967,807 + AO356_26345 0.39 -0.1
5,967,807 + AO356_26345 0.39 -2.1
5,967,808 - AO356_26345 0.39 +1.4
5,967,808 - AO356_26345 0.39 +0.4
5,967,858 + AO356_26345 0.46 +1.2
5,967,936 + AO356_26345 0.56 -0.1
5,967,936 + AO356_26345 0.56 -0.1
5,967,937 - AO356_26345 0.56 +0.7
5,967,937 - AO356_26345 0.56 -2.1
5,968,197 + +1.8
5,968,198 - -2.7
5,968,267 + -2.1
5,968,267 + +1.4
5,968,267 + -0.6
5,968,268 - -1.1
5,968,271 + -1.1
5,968,271 + -0.1
5,968,271 + -1.1
5,968,271 + +0.4
5,968,272 - -3.5
5,968,300 + -0.1
5,968,301 - +0.4
5,968,301 - +0.4
5,968,301 - -1.1
5,968,301 - +0.9
5,968,658 + AO356_26350 0.31 -1.4
5,968,746 - AO356_26350 0.39 -1.2
5,968,746 - AO356_26350 0.39 -1.2

Or see this region's nucleotide sequence