Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25695 and AO356_25700 are separated by 69 nucleotides AO356_25700 and AO356_25705 are separated by 253 nucleotides
AO356_25695: AO356_25695 - ligand-gated channel, at 5,811,611 to 5,813,734
_25695
AO356_25700: AO356_25700 - hypothetical protein, at 5,813,804 to 5,814,799
_25700
AO356_25705: AO356_25705 - monooxygenase, at 5,815,053 to 5,816,096
_25705
Position (kb) 5813
5814
5815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5812.881 kb on - strand, within AO356_25695 at 5813.039 kb on - strand, within AO356_25695 at 5813.039 kb on - strand, within AO356_25695 at 5813.073 kb on - strand, within AO356_25695 at 5813.143 kb on + strand, within AO356_25695 at 5813.143 kb on + strand, within AO356_25695 at 5813.144 kb on - strand, within AO356_25695 at 5813.144 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.148 kb on - strand, within AO356_25695 at 5813.166 kb on - strand, within AO356_25695 at 5813.188 kb on + strand, within AO356_25695 at 5813.188 kb on + strand, within AO356_25695 at 5813.226 kb on + strand, within AO356_25695 at 5813.227 kb on - strand, within AO356_25695 at 5813.242 kb on - strand, within AO356_25695 at 5813.348 kb on + strand, within AO356_25695 at 5813.349 kb on - strand, within AO356_25695 at 5813.349 kb on - strand, within AO356_25695 at 5813.354 kb on + strand, within AO356_25695 at 5813.370 kb on + strand, within AO356_25695 at 5813.371 kb on - strand, within AO356_25695 at 5813.371 kb on - strand, within AO356_25695 at 5813.371 kb on - strand, within AO356_25695 at 5813.501 kb on + strand, within AO356_25695 at 5813.553 kb on - strand at 5813.553 kb on - strand at 5813.553 kb on - strand at 5813.648 kb on + strand at 5813.732 kb on + strand at 5813.841 kb on + strand at 5813.845 kb on + strand at 5813.845 kb on + strand at 5813.898 kb on + strand at 5813.899 kb on - strand at 5813.901 kb on + strand at 5813.902 kb on - strand at 5813.931 kb on - strand, within AO356_25700 at 5813.962 kb on - strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.991 kb on + strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5813.992 kb on - strand, within AO356_25700 at 5814.025 kb on - strand, within AO356_25700 at 5814.237 kb on + strand, within AO356_25700 at 5814.237 kb on + strand, within AO356_25700 at 5814.237 kb on + strand, within AO356_25700 at 5814.238 kb on - strand, within AO356_25700 at 5814.288 kb on + strand, within AO356_25700 at 5814.288 kb on + strand, within AO356_25700 at 5814.288 kb on + strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.289 kb on - strand, within AO356_25700 at 5814.367 kb on + strand, within AO356_25700 at 5814.367 kb on + strand, within AO356_25700 at 5814.369 kb on + strand, within AO356_25700 at 5814.396 kb on + strand, within AO356_25700 at 5814.465 kb on + strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.466 kb on - strand, within AO356_25700 at 5814.621 kb on + strand, within AO356_25700 at 5814.622 kb on - strand, within AO356_25700 at 5814.622 kb on - strand, within AO356_25700 at 5814.651 kb on + strand, within AO356_25700 at 5814.751 kb on + strand at 5814.752 kb on - strand at 5814.812 kb on + strand at 5814.930 kb on + strand at 5814.931 kb on - strand at 5814.931 kb on - strand at 5814.931 kb on - strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.986 kb on + strand at 5814.987 kb on - strand at 5814.987 kb on - strand at 5815.082 kb on + strand at 5815.168 kb on + strand, within AO356_25705 at 5815.521 kb on + strand, within AO356_25705 at 5815.522 kb on - strand, within AO356_25705
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,812,881 - AO356_25695 0.60 +2.0 5,813,039 - AO356_25695 0.67 +0.1 5,813,039 - AO356_25695 0.67 +0.5 5,813,073 - AO356_25695 0.69 -0.9 5,813,143 + AO356_25695 0.72 +1.5 5,813,143 + AO356_25695 0.72 +0.4 5,813,144 - AO356_25695 0.72 -0.4 5,813,144 - AO356_25695 0.72 -1.8 5,813,148 - AO356_25695 0.72 -0.2 5,813,148 - AO356_25695 0.72 -1.0 5,813,148 - AO356_25695 0.72 +1.6 5,813,148 - AO356_25695 0.72 +1.1 5,813,166 - AO356_25695 0.73 -0.2 5,813,188 + AO356_25695 0.74 +1.1 5,813,188 + AO356_25695 0.74 +0.4 5,813,226 + AO356_25695 0.76 -0.2 5,813,227 - AO356_25695 0.76 -2.2 5,813,242 - AO356_25695 0.77 -1.2 5,813,348 + AO356_25695 0.82 -1.2 5,813,349 - AO356_25695 0.82 +0.4 5,813,349 - AO356_25695 0.82 -0.2 5,813,354 + AO356_25695 0.82 -1.2 5,813,370 + AO356_25695 0.83 +1.4 5,813,371 - AO356_25695 0.83 +1.3 5,813,371 - AO356_25695 0.83 -0.2 5,813,371 - AO356_25695 0.83 +1.2 5,813,501 + AO356_25695 0.89 -0.3 5,813,553 - -1.8 5,813,553 - +1.1 5,813,553 - -0.4 5,813,648 + +1.4 5,813,732 + -1.2 5,813,841 + +0.2 5,813,845 + -0.2 5,813,845 + +0.0 5,813,898 + -1.8 5,813,899 - -0.2 5,813,901 + +1.4 5,813,902 - +2.5 5,813,931 - AO356_25700 0.13 -0.4 5,813,962 - AO356_25700 0.16 -0.5 5,813,991 + AO356_25700 0.19 +0.4 5,813,991 + AO356_25700 0.19 +0.4 5,813,991 + AO356_25700 0.19 -0.2 5,813,991 + AO356_25700 0.19 +1.1 5,813,991 + AO356_25700 0.19 +1.1 5,813,991 + AO356_25700 0.19 -1.2 5,813,991 + AO356_25700 0.19 +0.9 5,813,992 - AO356_25700 0.19 +1.1 5,813,992 - AO356_25700 0.19 -2.3 5,813,992 - AO356_25700 0.19 +1.1 5,813,992 - AO356_25700 0.19 +0.2 5,814,025 - AO356_25700 0.22 -0.2 5,814,237 + AO356_25700 0.43 -0.8 5,814,237 + AO356_25700 0.43 +0.8 5,814,237 + AO356_25700 0.43 +0.0 5,814,238 - AO356_25700 0.44 -0.5 5,814,288 + AO356_25700 0.49 -0.4 5,814,288 + AO356_25700 0.49 +0.8 5,814,288 + AO356_25700 0.49 -1.2 5,814,289 - AO356_25700 0.49 -0.5 5,814,289 - AO356_25700 0.49 +0.6 5,814,289 - AO356_25700 0.49 -0.9 5,814,289 - AO356_25700 0.49 -0.2 5,814,289 - AO356_25700 0.49 +1.1 5,814,289 - AO356_25700 0.49 -1.2 5,814,367 + AO356_25700 0.57 +0.8 5,814,367 + AO356_25700 0.57 -0.2 5,814,369 + AO356_25700 0.57 -2.8 5,814,396 + AO356_25700 0.59 -1.2 5,814,465 + AO356_25700 0.66 -0.2 5,814,466 - AO356_25700 0.66 -0.2 5,814,466 - AO356_25700 0.66 +0.4 5,814,466 - AO356_25700 0.66 +0.4 5,814,466 - AO356_25700 0.66 +0.6 5,814,621 + AO356_25700 0.82 -1.6 5,814,622 - AO356_25700 0.82 +0.4 5,814,622 - AO356_25700 0.82 +1.8 5,814,651 + AO356_25700 0.85 -1.2 5,814,751 + -0.8 5,814,752 - -0.4 5,814,812 + -0.6 5,814,930 + -0.1 5,814,931 - +0.2 5,814,931 - -0.2 5,814,931 - +2.1 5,814,986 + -0.2 5,814,986 + -2.2 5,814,986 + -0.2 5,814,986 + -1.2 5,814,986 + -2.2 5,814,986 + -1.2 5,814,987 - -0.2 5,814,987 - -0.4 5,815,082 + +0.4 5,815,168 + AO356_25705 0.11 -1.2 5,815,521 + AO356_25705 0.45 -0.2 5,815,522 - AO356_25705 0.45 +0.0
Or see this region's nucleotide sequence