Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25510 and AO356_25515 are separated by 172 nucleotides AO356_25515 and AO356_25520 overlap by 8 nucleotides AO356_25520 and AO356_25525 overlap by 8 nucleotides AO356_25525 and AO356_25530 are separated by 79 nucleotides
AO356_25510: AO356_25510 - transcriptional regulator, at 5,769,068 to 5,770,030
_25510
AO356_25515: AO356_25515 - 3-ketoacyl-ACP reductase, at 5,770,203 to 5,770,970
_25515
AO356_25520: AO356_25520 - 3-oxoacyl-ACP reductase, at 5,770,963 to 5,771,763
_25520
AO356_25525: AO356_25525 - moaF, at 5,771,756 to 5,772,577
_25525
AO356_25530: AO356_25530 - LuxR family transcriptional regulator, at 5,772,657 to 5,773,313
_25530
Position (kb) 5770
5771
5772 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5770.161 kb on + strand at 5770.258 kb on + strand at 5770.259 kb on - strand at 5770.259 kb on - strand at 5770.259 kb on - strand at 5770.935 kb on + strand at 5771.154 kb on - strand, within AO356_25520 at 5771.214 kb on + strand, within AO356_25520 at 5771.215 kb on - strand, within AO356_25520 at 5771.244 kb on + strand, within AO356_25520 at 5771.271 kb on - strand, within AO356_25520 at 5771.325 kb on - strand, within AO356_25520 at 5771.380 kb on - strand, within AO356_25520 at 5771.426 kb on + strand, within AO356_25520 at 5771.426 kb on + strand, within AO356_25520 at 5771.427 kb on - strand, within AO356_25520 at 5771.427 kb on - strand, within AO356_25520 at 5771.693 kb on + strand at 5771.693 kb on + strand at 5771.694 kb on - strand at 5771.694 kb on - strand at 5771.796 kb on + strand at 5771.937 kb on + strand, within AO356_25525 at 5771.937 kb on + strand, within AO356_25525 at 5771.958 kb on + strand, within AO356_25525 at 5771.959 kb on - strand, within AO356_25525 at 5772.039 kb on + strand, within AO356_25525 at 5772.051 kb on + strand, within AO356_25525 at 5772.051 kb on + strand, within AO356_25525 at 5772.069 kb on + strand, within AO356_25525 at 5772.566 kb on - strand at 5772.601 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,770,161 + -2.2 5,770,258 + -3.5 5,770,259 - +0.8 5,770,259 - +0.7 5,770,259 - +0.2 5,770,935 + +1.8 5,771,154 - AO356_25520 0.24 -0.2 5,771,214 + AO356_25520 0.31 -1.2 5,771,215 - AO356_25520 0.31 -1.2 5,771,244 + AO356_25520 0.35 -1.2 5,771,271 - AO356_25520 0.38 -0.2 5,771,325 - AO356_25520 0.45 -1.2 5,771,380 - AO356_25520 0.52 -2.2 5,771,426 + AO356_25520 0.58 -1.2 5,771,426 + AO356_25520 0.58 -0.2 5,771,427 - AO356_25520 0.58 -0.2 5,771,427 - AO356_25520 0.58 -2.2 5,771,693 + -2.2 5,771,693 + +2.2 5,771,694 - -1.2 5,771,694 - -1.2 5,771,796 + -0.8 5,771,937 + AO356_25525 0.22 +0.8 5,771,937 + AO356_25525 0.22 +1.6 5,771,958 + AO356_25525 0.25 +0.4 5,771,959 - AO356_25525 0.25 -1.2 5,772,039 + AO356_25525 0.34 +0.2 5,772,051 + AO356_25525 0.36 -0.2 5,772,051 + AO356_25525 0.36 -0.6 5,772,069 + AO356_25525 0.38 +0.2 5,772,566 - +0.4 5,772,601 + +1.9
Or see this region's nucleotide sequence