Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25325 and AO356_25330 are separated by 3 nucleotides AO356_25330 and AO356_25335 overlap by 4 nucleotides AO356_25335 and AO356_25340 are separated by 179 nucleotides
AO356_25325: AO356_25325 - FAD-dependent oxidoreductase, at 5,730,178 to 5,731,425
_25325
AO356_25330: AO356_25330 - short-chain dehydrogenase, at 5,731,429 to 5,732,184
_25330
AO356_25335: AO356_25335 - transcriptional regulator, at 5,732,181 to 5,732,603
_25335
AO356_25340: AO356_25340 - NADH:flavin oxidoreductase, at 5,732,783 to 5,733,868
_25340
Position (kb) 5731
5732
5733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5730.452 kb on + strand, within AO356_25325 at 5730.453 kb on - strand, within AO356_25325 at 5730.453 kb on - strand, within AO356_25325 at 5730.494 kb on + strand, within AO356_25325 at 5730.494 kb on + strand, within AO356_25325 at 5730.783 kb on + strand, within AO356_25325 at 5730.783 kb on + strand, within AO356_25325 at 5730.784 kb on - strand, within AO356_25325 at 5730.784 kb on - strand, within AO356_25325 at 5730.784 kb on - strand, within AO356_25325 at 5730.784 kb on - strand, within AO356_25325 at 5730.784 kb on - strand, within AO356_25325 at 5730.785 kb on + strand, within AO356_25325 at 5730.786 kb on - strand, within AO356_25325 at 5730.930 kb on + strand, within AO356_25325 at 5730.930 kb on + strand, within AO356_25325 at 5730.931 kb on - strand, within AO356_25325 at 5730.941 kb on + strand, within AO356_25325 at 5730.941 kb on + strand, within AO356_25325 at 5730.942 kb on - strand, within AO356_25325 at 5730.942 kb on - strand, within AO356_25325 at 5730.983 kb on + strand, within AO356_25325 at 5730.984 kb on - strand, within AO356_25325 at 5731.139 kb on + strand, within AO356_25325 at 5731.140 kb on - strand, within AO356_25325 at 5731.140 kb on - strand, within AO356_25325 at 5731.140 kb on - strand, within AO356_25325 at 5731.185 kb on + strand, within AO356_25325 at 5731.236 kb on - strand, within AO356_25325 at 5731.250 kb on + strand, within AO356_25325 at 5731.250 kb on + strand, within AO356_25325 at 5731.251 kb on - strand, within AO356_25325 at 5731.251 kb on - strand, within AO356_25325 at 5731.376 kb on + strand at 5731.376 kb on + strand at 5731.377 kb on - strand at 5731.507 kb on + strand, within AO356_25330 at 5731.508 kb on - strand, within AO356_25330 at 5731.573 kb on - strand, within AO356_25330 at 5731.823 kb on - strand, within AO356_25330 at 5731.823 kb on - strand, within AO356_25330 at 5731.922 kb on + strand, within AO356_25330 at 5731.922 kb on + strand, within AO356_25330 at 5731.922 kb on + strand, within AO356_25330 at 5731.923 kb on - strand, within AO356_25330 at 5731.923 kb on - strand, within AO356_25330 at 5732.239 kb on + strand, within AO356_25335 at 5732.240 kb on - strand, within AO356_25335 at 5732.278 kb on + strand, within AO356_25335 at 5732.377 kb on + strand, within AO356_25335 at 5732.443 kb on + strand, within AO356_25335 at 5732.444 kb on - strand, within AO356_25335 at 5732.444 kb on - strand, within AO356_25335 at 5732.525 kb on - strand, within AO356_25335 at 5732.606 kb on + strand at 5732.607 kb on - strand at 5732.658 kb on - strand at 5732.658 kb on - strand at 5732.658 kb on - strand at 5732.658 kb on - strand at 5732.670 kb on - strand at 5732.672 kb on - strand at 5732.672 kb on - strand at 5732.823 kb on + strand at 5732.824 kb on - strand at 5732.844 kb on + strand at 5732.844 kb on + strand at 5732.844 kb on + strand at 5732.844 kb on + strand at 5732.845 kb on - strand at 5732.845 kb on - strand at 5733.078 kb on + strand, within AO356_25340
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,730,452 + AO356_25325 0.22 -1.1 5,730,453 - AO356_25325 0.22 -0.1 5,730,453 - AO356_25325 0.22 +0.9 5,730,494 + AO356_25325 0.25 +0.9 5,730,494 + AO356_25325 0.25 -1.1 5,730,783 + AO356_25325 0.48 +0.5 5,730,783 + AO356_25325 0.48 -0.5 5,730,784 - AO356_25325 0.49 -1.7 5,730,784 - AO356_25325 0.49 +0.5 5,730,784 - AO356_25325 0.49 +0.3 5,730,784 - AO356_25325 0.49 -0.5 5,730,784 - AO356_25325 0.49 -0.1 5,730,785 + AO356_25325 0.49 +0.5 5,730,786 - AO356_25325 0.49 +0.9 5,730,930 + AO356_25325 0.60 +0.5 5,730,930 + AO356_25325 0.60 -1.1 5,730,931 - AO356_25325 0.60 +0.5 5,730,941 + AO356_25325 0.61 -0.1 5,730,941 + AO356_25325 0.61 -1.1 5,730,942 - AO356_25325 0.61 +0.5 5,730,942 - AO356_25325 0.61 -1.1 5,730,983 + AO356_25325 0.65 -2.7 5,730,984 - AO356_25325 0.65 +0.9 5,731,139 + AO356_25325 0.77 -0.1 5,731,140 - AO356_25325 0.77 +1.2 5,731,140 - AO356_25325 0.77 +0.6 5,731,140 - AO356_25325 0.77 +0.3 5,731,185 + AO356_25325 0.81 -1.1 5,731,236 - AO356_25325 0.85 -0.4 5,731,250 + AO356_25325 0.86 +1.2 5,731,250 + AO356_25325 0.86 +2.2 5,731,251 - AO356_25325 0.86 -0.1 5,731,251 - AO356_25325 0.86 +0.9 5,731,376 + -0.1 5,731,376 + -1.7 5,731,377 - -0.1 5,731,507 + AO356_25330 0.10 -0.7 5,731,508 - AO356_25330 0.10 -0.1 5,731,573 - AO356_25330 0.19 +1.5 5,731,823 - AO356_25330 0.52 -0.1 5,731,823 - AO356_25330 0.52 -0.1 5,731,922 + AO356_25330 0.65 +0.5 5,731,922 + AO356_25330 0.65 -0.1 5,731,922 + AO356_25330 0.65 +1.5 5,731,923 - AO356_25330 0.65 +0.5 5,731,923 - AO356_25330 0.65 +0.9 5,732,239 + AO356_25335 0.14 -1.1 5,732,240 - AO356_25335 0.14 -0.1 5,732,278 + AO356_25335 0.23 +0.2 5,732,377 + AO356_25335 0.46 +0.2 5,732,443 + AO356_25335 0.62 -1.1 5,732,444 - AO356_25335 0.62 +0.9 5,732,444 - AO356_25335 0.62 -0.1 5,732,525 - AO356_25335 0.81 +0.9 5,732,606 + -0.5 5,732,607 - -0.5 5,732,658 - +0.2 5,732,658 - +0.5 5,732,658 - +0.9 5,732,658 - +1.5 5,732,670 - -1.1 5,732,672 - -0.1 5,732,672 - -0.1 5,732,823 + +1.0 5,732,824 - +1.5 5,732,844 + +1.0 5,732,844 + -0.5 5,732,844 + -0.5 5,732,844 + -0.6 5,732,845 - +0.5 5,732,845 - -2.1 5,733,078 + AO356_25340 0.27 +0.9
Or see this region's nucleotide sequence