Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24920 and AO356_24925 are separated by 12 nucleotides AO356_24925 and AO356_24930 overlap by 8 nucleotides AO356_24930 and AO356_24935 are separated by 10 nucleotides
AO356_24920: AO356_24920 - amino acid ABC transporter, at 5,646,551 to 5,647,201
_24920
AO356_24925: AO356_24925 - ABC transporter permease, at 5,647,214 to 5,647,879
_24925
AO356_24930: AO356_24930 - hypothetical protein, at 5,647,872 to 5,649,647
_24930
AO356_24935: AO356_24935 - amino acid ABC transporter substrate-binding protein, at 5,649,658 to 5,650,476
_24935
Position (kb) 5647
5648
5649
5650 Strain fitness (log2 ratio) -2
-1
0
1 at 5646.903 kb on + strand, within AO356_24920 at 5646.903 kb on + strand, within AO356_24920 at 5646.915 kb on + strand, within AO356_24920 at 5646.931 kb on + strand, within AO356_24920 at 5647.164 kb on + strand at 5647.193 kb on - strand at 5647.281 kb on + strand, within AO356_24925 at 5647.282 kb on - strand, within AO356_24925 at 5647.335 kb on + strand, within AO356_24925 at 5647.335 kb on + strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.336 kb on - strand, within AO356_24925 at 5647.647 kb on + strand, within AO356_24925 at 5647.656 kb on + strand, within AO356_24925 at 5647.657 kb on - strand, within AO356_24925 at 5647.657 kb on - strand, within AO356_24925 at 5647.869 kb on + strand at 5648.137 kb on + strand, within AO356_24930 at 5648.138 kb on - strand, within AO356_24930 at 5648.198 kb on - strand, within AO356_24930 at 5648.198 kb on - strand, within AO356_24930 at 5648.515 kb on - strand, within AO356_24930 at 5648.737 kb on + strand, within AO356_24930 at 5648.738 kb on - strand, within AO356_24930 at 5648.845 kb on + strand, within AO356_24930 at 5648.845 kb on + strand, within AO356_24930 at 5648.846 kb on - strand, within AO356_24930 at 5649.010 kb on + strand, within AO356_24930 at 5649.010 kb on + strand, within AO356_24930 at 5649.011 kb on - strand, within AO356_24930 at 5649.011 kb on - strand, within AO356_24930 at 5649.045 kb on + strand, within AO356_24930 at 5649.046 kb on - strand, within AO356_24930 at 5649.046 kb on - strand, within AO356_24930 at 5649.666 kb on - strand at 5649.666 kb on - strand at 5649.666 kb on - strand at 5649.776 kb on + strand, within AO356_24935 at 5649.834 kb on - strand, within AO356_24935 at 5649.866 kb on + strand, within AO356_24935 at 5649.866 kb on + strand, within AO356_24935 at 5649.866 kb on + strand, within AO356_24935 at 5650.028 kb on + strand, within AO356_24935 at 5650.073 kb on + strand, within AO356_24935 at 5650.073 kb on + strand, within AO356_24935 at 5650.127 kb on + strand, within AO356_24935 at 5650.258 kb on + strand, within AO356_24935 at 5650.510 kb on - strand at 5650.579 kb on + strand at 5650.580 kb on - strand at 5650.601 kb on + strand at 5650.601 kb on + strand at 5650.602 kb on - strand at 5650.602 kb on - strand at 5650.629 kb on - strand at 5650.644 kb on + strand at 5650.644 kb on + strand at 5650.644 kb on + strand at 5650.645 kb on - strand at 5650.645 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,646,903 + AO356_24920 0.54 -0.2 5,646,903 + AO356_24920 0.54 +0.4 5,646,915 + AO356_24920 0.56 -0.2 5,646,931 + AO356_24920 0.58 +0.4 5,647,164 + -0.2 5,647,193 - +1.5 5,647,281 + AO356_24925 0.10 -1.2 5,647,282 - AO356_24925 0.10 -1.2 5,647,335 + AO356_24925 0.18 -1.2 5,647,335 + AO356_24925 0.18 -0.2 5,647,336 - AO356_24925 0.18 -2.2 5,647,336 - AO356_24925 0.18 -0.4 5,647,336 - AO356_24925 0.18 -0.7 5,647,336 - AO356_24925 0.18 -0.9 5,647,647 + AO356_24925 0.65 -1.2 5,647,656 + AO356_24925 0.66 -0.2 5,647,657 - AO356_24925 0.67 +1.2 5,647,657 - AO356_24925 0.67 -1.2 5,647,869 + +0.8 5,648,137 + AO356_24930 0.15 +1.2 5,648,138 - AO356_24930 0.15 -0.2 5,648,198 - AO356_24930 0.18 -0.2 5,648,198 - AO356_24930 0.18 -0.8 5,648,515 - AO356_24930 0.36 -0.6 5,648,737 + AO356_24930 0.49 -1.2 5,648,738 - AO356_24930 0.49 +1.2 5,648,845 + AO356_24930 0.55 -1.2 5,648,845 + AO356_24930 0.55 -1.5 5,648,846 - AO356_24930 0.55 +1.2 5,649,010 + AO356_24930 0.64 -0.2 5,649,010 + AO356_24930 0.64 +1.4 5,649,011 - AO356_24930 0.64 -1.2 5,649,011 - AO356_24930 0.64 +1.2 5,649,045 + AO356_24930 0.66 -0.6 5,649,046 - AO356_24930 0.66 -2.2 5,649,046 - AO356_24930 0.66 -0.2 5,649,666 - +0.8 5,649,666 - +0.2 5,649,666 - +0.4 5,649,776 + AO356_24935 0.14 -0.9 5,649,834 - AO356_24935 0.21 -0.9 5,649,866 + AO356_24935 0.25 +0.4 5,649,866 + AO356_24935 0.25 +0.0 5,649,866 + AO356_24935 0.25 -0.2 5,650,028 + AO356_24935 0.45 +0.4 5,650,073 + AO356_24935 0.51 -1.2 5,650,073 + AO356_24935 0.51 -1.2 5,650,127 + AO356_24935 0.57 +0.8 5,650,258 + AO356_24935 0.73 -1.4 5,650,510 - -2.2 5,650,579 + -1.2 5,650,580 - -0.2 5,650,601 + +1.6 5,650,601 + -0.2 5,650,602 - -2.2 5,650,602 - -1.5 5,650,629 - -1.2 5,650,644 + -0.2 5,650,644 + +0.8 5,650,644 + -2.5 5,650,645 - +0.4 5,650,645 - -1.2
Or see this region's nucleotide sequence