Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24700 and AO356_24705 are separated by 429 nucleotides AO356_24705 and AO356_24710 are separated by 187 nucleotides AO356_24710 and AO356_24715 are separated by 330 nucleotides
AO356_24700: AO356_24700 - hypothetical protein, at 5,586,422 to 5,586,775
_24700
AO356_24705: AO356_24705 - NAD-glutamate dehydrogenase, at 5,587,205 to 5,592,073
_24705
AO356_24710: AO356_24710 - cupin, at 5,592,261 to 5,592,665
_24710
AO356_24715: AO356_24715 - antibiotic biosynthesis monooxygenase, at 5,592,996 to 5,593,289
_24715
Position (kb) 5587
5588
5589
5590
5591
5592
5593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5586.294 kb on + strand at 5586.295 kb on - strand at 5586.295 kb on - strand at 5586.350 kb on + strand at 5586.350 kb on + strand at 5586.350 kb on + strand at 5586.351 kb on - strand at 5586.351 kb on - strand at 5586.351 kb on - strand at 5586.351 kb on - strand at 5586.434 kb on + strand at 5586.434 kb on + strand at 5586.434 kb on + strand at 5586.434 kb on + strand at 5586.435 kb on - strand at 5586.435 kb on - strand at 5586.435 kb on - strand at 5586.435 kb on - strand at 5586.435 kb on - strand at 5586.438 kb on + strand at 5586.438 kb on + strand at 5586.438 kb on + strand at 5586.438 kb on + strand at 5586.438 kb on + strand at 5586.438 kb on + strand at 5586.438 kb on + strand at 5586.439 kb on - strand at 5586.439 kb on - strand at 5586.439 kb on - strand at 5586.439 kb on - strand at 5586.439 kb on - strand at 5586.439 kb on - strand at 5586.439 kb on - strand at 5586.890 kb on - strand at 5586.936 kb on + strand at 5586.936 kb on + strand at 5586.977 kb on - strand at 5587.049 kb on + strand at 5587.050 kb on - strand at 5587.349 kb on - strand at 5587.455 kb on - strand at 5587.560 kb on - strand at 5587.679 kb on + strand at 5587.679 kb on + strand at 5588.042 kb on + strand, within AO356_24705 at 5588.042 kb on + strand, within AO356_24705 at 5588.043 kb on - strand, within AO356_24705 at 5588.055 kb on - strand, within AO356_24705 at 5588.132 kb on + strand, within AO356_24705 at 5588.132 kb on + strand, within AO356_24705 at 5588.133 kb on - strand, within AO356_24705 at 5588.133 kb on - strand, within AO356_24705 at 5588.198 kb on + strand, within AO356_24705 at 5588.199 kb on - strand, within AO356_24705 at 5588.199 kb on - strand, within AO356_24705 at 5588.199 kb on - strand, within AO356_24705 at 5588.199 kb on - strand, within AO356_24705 at 5588.214 kb on - strand, within AO356_24705 at 5588.214 kb on - strand, within AO356_24705 at 5588.241 kb on - strand, within AO356_24705 at 5588.474 kb on + strand, within AO356_24705 at 5588.492 kb on + strand, within AO356_24705 at 5588.492 kb on + strand, within AO356_24705 at 5588.492 kb on + strand, within AO356_24705 at 5589.222 kb on - strand, within AO356_24705 at 5589.266 kb on + strand, within AO356_24705 at 5589.267 kb on - strand, within AO356_24705 at 5589.267 kb on - strand, within AO356_24705 at 5589.267 kb on - strand, within AO356_24705 at 5589.268 kb on + strand, within AO356_24705 at 5589.338 kb on + strand, within AO356_24705 at 5589.531 kb on - strand, within AO356_24705 at 5589.939 kb on - strand, within AO356_24705 at 5590.007 kb on + strand, within AO356_24705 at 5590.523 kb on + strand, within AO356_24705 at 5590.523 kb on + strand, within AO356_24705 at 5590.523 kb on + strand, within AO356_24705 at 5590.524 kb on - strand, within AO356_24705 at 5590.524 kb on - strand, within AO356_24705 at 5590.859 kb on + strand, within AO356_24705 at 5590.859 kb on + strand, within AO356_24705 at 5590.859 kb on + strand, within AO356_24705 at 5590.859 kb on + strand, within AO356_24705 at 5590.919 kb on + strand, within AO356_24705 at 5590.919 kb on + strand, within AO356_24705 at 5590.920 kb on - strand, within AO356_24705 at 5591.061 kb on - strand, within AO356_24705 at 5591.315 kb on + strand, within AO356_24705 at 5591.315 kb on + strand, within AO356_24705 at 5591.315 kb on + strand, within AO356_24705 at 5591.333 kb on - strand, within AO356_24705 at 5591.585 kb on + strand, within AO356_24705 at 5591.595 kb on - strand at 5591.654 kb on + strand at 5591.654 kb on + strand at 5591.723 kb on + strand at 5591.723 kb on + strand at 5591.723 kb on + strand at 5592.005 kb on + strand at 5592.005 kb on + strand at 5592.006 kb on - strand at 5592.006 kb on - strand at 5592.006 kb on - strand at 5592.250 kb on + strand at 5592.251 kb on - strand at 5592.262 kb on + strand at 5592.262 kb on + strand at 5592.263 kb on - strand at 5592.263 kb on - strand at 5592.263 kb on - strand at 5592.263 kb on - strand at 5592.403 kb on + strand, within AO356_24710 at 5592.403 kb on + strand, within AO356_24710 at 5592.403 kb on + strand, within AO356_24710 at 5592.404 kb on - strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.457 kb on + strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.512 kb on - strand, within AO356_24710 at 5592.610 kb on + strand, within AO356_24710 at 5592.652 kb on + strand at 5592.653 kb on - strand at 5592.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,586,294 + +0.9 5,586,295 - +0.5 5,586,295 - +0.5 5,586,350 + +0.9 5,586,350 + +1.3 5,586,350 + +0.9 5,586,351 - +1.8 5,586,351 - -0.1 5,586,351 - -1.1 5,586,351 - +1.9 5,586,434 + -1.1 5,586,434 + +0.5 5,586,434 + -0.6 5,586,434 + -1.2 5,586,435 - +0.5 5,586,435 - +1.1 5,586,435 - +1.3 5,586,435 - +1.3 5,586,435 - -0.1 5,586,438 + -1.1 5,586,438 + -0.1 5,586,438 + +0.4 5,586,438 + +1.4 5,586,438 + -0.8 5,586,438 + -0.5 5,586,438 + +0.7 5,586,439 - +0.5 5,586,439 - +0.5 5,586,439 - -1.1 5,586,439 - +0.9 5,586,439 - +0.9 5,586,439 - +0.8 5,586,439 - +0.5 5,586,890 - -0.5 5,586,936 + -0.1 5,586,936 + +0.8 5,586,977 - -0.1 5,587,049 + -0.1 5,587,050 - +0.8 5,587,349 - +1.4 5,587,455 - +1.5 5,587,560 - -0.5 5,587,679 + +0.5 5,587,679 + +1.0 5,588,042 + AO356_24705 0.17 +1.3 5,588,042 + AO356_24705 0.17 +0.1 5,588,043 - AO356_24705 0.17 -2.0 5,588,055 - AO356_24705 0.17 +0.1 5,588,132 + AO356_24705 0.19 -0.4 5,588,132 + AO356_24705 0.19 -1.0 5,588,133 - AO356_24705 0.19 -1.0 5,588,133 - AO356_24705 0.19 -0.0 5,588,198 + AO356_24705 0.20 -0.5 5,588,199 - AO356_24705 0.20 +1.3 5,588,199 - AO356_24705 0.20 +2.0 5,588,199 - AO356_24705 0.20 -2.0 5,588,199 - AO356_24705 0.20 +0.5 5,588,214 - AO356_24705 0.21 -0.8 5,588,214 - AO356_24705 0.21 -0.2 5,588,241 - AO356_24705 0.21 -0.5 5,588,474 + AO356_24705 0.26 -0.0 5,588,492 + AO356_24705 0.26 -1.0 5,588,492 + AO356_24705 0.26 +0.5 5,588,492 + AO356_24705 0.26 -1.0 5,589,222 - AO356_24705 0.41 -0.0 5,589,266 + AO356_24705 0.42 +0.3 5,589,267 - AO356_24705 0.42 +0.5 5,589,267 - AO356_24705 0.42 -1.0 5,589,267 - AO356_24705 0.42 -2.0 5,589,268 + AO356_24705 0.42 +1.7 5,589,338 + AO356_24705 0.44 +1.0 5,589,531 - AO356_24705 0.48 -0.5 5,589,939 - AO356_24705 0.56 -0.6 5,590,007 + AO356_24705 0.58 +1.4 5,590,523 + AO356_24705 0.68 +2.3 5,590,523 + AO356_24705 0.68 +0.5 5,590,523 + AO356_24705 0.68 +2.0 5,590,524 - AO356_24705 0.68 -1.0 5,590,524 - AO356_24705 0.68 +1.0 5,590,859 + AO356_24705 0.75 -0.5 5,590,859 + AO356_24705 0.75 -0.5 5,590,859 + AO356_24705 0.75 +0.5 5,590,859 + AO356_24705 0.75 +0.5 5,590,919 + AO356_24705 0.76 -1.0 5,590,919 + AO356_24705 0.76 -0.3 5,590,920 - AO356_24705 0.76 +0.8 5,591,061 - AO356_24705 0.79 -0.9 5,591,315 + AO356_24705 0.84 +0.4 5,591,315 + AO356_24705 0.84 -1.7 5,591,315 + AO356_24705 0.84 -1.0 5,591,333 - AO356_24705 0.85 +1.5 5,591,585 + AO356_24705 0.90 -1.0 5,591,595 - +1.3 5,591,654 + +0.5 5,591,654 + -0.0 5,591,723 + -1.0 5,591,723 + -0.3 5,591,723 + -1.5 5,592,005 + -1.0 5,592,005 + -0.8 5,592,006 - -0.0 5,592,006 - +0.1 5,592,006 - -1.6 5,592,250 + -1.0 5,592,251 - -0.0 5,592,262 + +0.5 5,592,262 + -3.0 5,592,263 - +1.0 5,592,263 - -1.0 5,592,263 - -0.4 5,592,263 - +1.0 5,592,403 + AO356_24710 0.35 -2.0 5,592,403 + AO356_24710 0.35 +1.3 5,592,403 + AO356_24710 0.35 -1.6 5,592,404 - AO356_24710 0.35 +1.0 5,592,457 + AO356_24710 0.48 -0.0 5,592,457 + AO356_24710 0.48 -1.8 5,592,457 + AO356_24710 0.48 -1.0 5,592,512 - AO356_24710 0.62 -1.0 5,592,512 - AO356_24710 0.62 -1.0 5,592,610 + AO356_24710 0.86 -1.6 5,592,652 + -1.0 5,592,653 - -0.0 5,592,726 - +2.0
Or see this region's nucleotide sequence