Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24685 and AO356_24690 overlap by 8 nucleotides AO356_24690 and AO356_24695 are separated by 154 nucleotides
AO356_24685: AO356_24685 - 2-dehydro-3-deoxygluconokinase, at 5,583,209 to 5,584,189
_24685
AO356_24690: AO356_24690 - AP endonuclease, at 5,584,182 to 5,584,964
_24690
AO356_24695: AO356_24695 - transcriptional regulator, at 5,585,119 to 5,586,105
_24695
Position (kb) 5584
5585 Strain fitness (log2 ratio) -1
0
1
2
3 at 5583.270 kb on - strand at 5583.487 kb on - strand, within AO356_24685 at 5583.540 kb on + strand, within AO356_24685 at 5583.540 kb on + strand, within AO356_24685 at 5583.541 kb on - strand, within AO356_24685 at 5583.672 kb on - strand, within AO356_24685 at 5583.724 kb on + strand, within AO356_24685 at 5583.725 kb on - strand, within AO356_24685 at 5583.870 kb on + strand, within AO356_24685 at 5583.870 kb on + strand, within AO356_24685 at 5584.411 kb on + strand, within AO356_24690 at 5584.411 kb on + strand, within AO356_24690 at 5584.412 kb on - strand, within AO356_24690 at 5584.420 kb on + strand, within AO356_24690 at 5584.420 kb on + strand, within AO356_24690 at 5584.420 kb on + strand, within AO356_24690 at 5584.770 kb on + strand, within AO356_24690 at 5584.770 kb on + strand, within AO356_24690 at 5584.770 kb on + strand, within AO356_24690 at 5584.770 kb on + strand, within AO356_24690 at 5584.771 kb on - strand, within AO356_24690 at 5585.292 kb on - strand, within AO356_24695 at 5585.508 kb on + strand, within AO356_24695 at 5585.771 kb on + strand, within AO356_24695 at 5585.772 kb on - strand, within AO356_24695 at 5585.842 kb on - strand, within AO356_24695 at 5585.844 kb on - strand, within AO356_24695 at 5585.882 kb on - strand, within AO356_24695
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,583,270 - +2.8 5,583,487 - AO356_24685 0.28 +0.9 5,583,540 + AO356_24685 0.34 -1.1 5,583,540 + AO356_24685 0.34 +0.1 5,583,541 - AO356_24685 0.34 -0.7 5,583,672 - AO356_24685 0.47 -1.1 5,583,724 + AO356_24685 0.52 +1.5 5,583,725 - AO356_24685 0.53 -1.1 5,583,870 + AO356_24685 0.67 -0.1 5,583,870 + AO356_24685 0.67 -0.1 5,584,411 + AO356_24690 0.29 -0.5 5,584,411 + AO356_24690 0.29 +0.3 5,584,412 - AO356_24690 0.29 +0.3 5,584,420 + AO356_24690 0.30 -0.1 5,584,420 + AO356_24690 0.30 +0.5 5,584,420 + AO356_24690 0.30 -0.6 5,584,770 + AO356_24690 0.75 +0.9 5,584,770 + AO356_24690 0.75 -0.1 5,584,770 + AO356_24690 0.75 -0.2 5,584,770 + AO356_24690 0.75 -1.1 5,584,771 - AO356_24690 0.75 +1.3 5,585,292 - AO356_24695 0.18 +0.9 5,585,508 + AO356_24695 0.39 -0.2 5,585,771 + AO356_24695 0.66 +0.8 5,585,772 - AO356_24695 0.66 +1.5 5,585,842 - AO356_24695 0.73 -0.5 5,585,844 - AO356_24695 0.73 +0.9 5,585,882 - AO356_24695 0.77 -0.5
Or see this region's nucleotide sequence