Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24280 and AO356_24285 are separated by 7 nucleotides AO356_24285 and AO356_24290 are separated by 292 nucleotides
AO356_24280: AO356_24280 - peptide synthase, at 5,475,279 to 5,478,707
_24280
AO356_24285: AO356_24285 - hypothetical protein, at 5,478,715 to 5,479,647
_24285
AO356_24290: AO356_24290 - energy transducer TonB, at 5,479,940 to 5,482,000
_24290
Position (kb) 5478
5479
5480 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5478.023 kb on - strand, within AO356_24280 at 5478.041 kb on - strand, within AO356_24280 at 5478.128 kb on - strand, within AO356_24280 at 5478.174 kb on + strand, within AO356_24280 at 5478.175 kb on - strand, within AO356_24280 at 5478.175 kb on - strand, within AO356_24280 at 5478.214 kb on + strand, within AO356_24280 at 5478.214 kb on + strand, within AO356_24280 at 5478.215 kb on - strand, within AO356_24280 at 5478.463 kb on + strand at 5478.463 kb on + strand at 5478.490 kb on + strand at 5478.839 kb on + strand, within AO356_24285 at 5478.896 kb on + strand, within AO356_24285 at 5478.897 kb on - strand, within AO356_24285 at 5478.897 kb on - strand, within AO356_24285 at 5478.950 kb on - strand, within AO356_24285 at 5479.175 kb on + strand, within AO356_24285 at 5479.187 kb on + strand, within AO356_24285 at 5479.187 kb on + strand, within AO356_24285 at 5479.187 kb on + strand, within AO356_24285 at 5479.334 kb on + strand, within AO356_24285 at 5479.334 kb on + strand, within AO356_24285 at 5479.335 kb on - strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.389 kb on + strand, within AO356_24285 at 5479.390 kb on - strand, within AO356_24285 at 5479.390 kb on - strand, within AO356_24285 at 5479.390 kb on - strand, within AO356_24285 at 5479.391 kb on + strand, within AO356_24285 at 5479.530 kb on + strand, within AO356_24285 at 5479.531 kb on - strand, within AO356_24285 at 5479.531 kb on - strand, within AO356_24285 at 5479.708 kb on + strand at 5479.708 kb on + strand at 5479.708 kb on + strand at 5479.708 kb on + strand at 5479.710 kb on + strand at 5479.711 kb on - strand at 5479.776 kb on + strand at 5479.777 kb on - strand at 5479.782 kb on - strand at 5479.806 kb on - strand at 5479.975 kb on - strand at 5479.986 kb on + strand at 5479.987 kb on - strand at 5480.074 kb on + strand at 5480.182 kb on + strand, within AO356_24290 at 5480.279 kb on + strand, within AO356_24290 at 5480.280 kb on - strand, within AO356_24290 at 5480.393 kb on - strand, within AO356_24290 at 5480.393 kb on - strand, within AO356_24290 at 5480.543 kb on - strand, within AO356_24290 at 5480.574 kb on - strand, within AO356_24290 at 5480.575 kb on + strand, within AO356_24290
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,478,023 - AO356_24280 0.80 +0.0 5,478,041 - AO356_24280 0.81 -1.0 5,478,128 - AO356_24280 0.83 -1.0 5,478,174 + AO356_24280 0.84 +0.5 5,478,175 - AO356_24280 0.84 -1.0 5,478,175 - AO356_24280 0.84 -0.7 5,478,214 + AO356_24280 0.86 -3.0 5,478,214 + AO356_24280 0.86 +0.0 5,478,215 - AO356_24280 0.86 -1.0 5,478,463 + +0.5 5,478,463 + -0.3 5,478,490 + +2.1 5,478,839 + AO356_24285 0.13 +0.2 5,478,896 + AO356_24285 0.19 +0.2 5,478,897 - AO356_24285 0.20 +0.8 5,478,897 - AO356_24285 0.20 +1.8 5,478,950 - AO356_24285 0.25 -1.0 5,479,175 + AO356_24285 0.49 -1.0 5,479,187 + AO356_24285 0.51 -1.6 5,479,187 + AO356_24285 0.51 -2.6 5,479,187 + AO356_24285 0.51 +0.3 5,479,334 + AO356_24285 0.66 -1.0 5,479,334 + AO356_24285 0.66 +0.3 5,479,335 - AO356_24285 0.66 -0.4 5,479,389 + AO356_24285 0.72 -1.0 5,479,389 + AO356_24285 0.72 -1.0 5,479,389 + AO356_24285 0.72 +1.0 5,479,389 + AO356_24285 0.72 +0.2 5,479,389 + AO356_24285 0.72 +0.0 5,479,390 - AO356_24285 0.72 +0.6 5,479,390 - AO356_24285 0.72 -0.2 5,479,390 - AO356_24285 0.72 -0.3 5,479,391 + AO356_24285 0.72 +0.3 5,479,530 + AO356_24285 0.87 -0.7 5,479,531 - AO356_24285 0.87 +1.0 5,479,531 - AO356_24285 0.87 -1.0 5,479,708 + -0.6 5,479,708 + -0.3 5,479,708 + +0.6 5,479,708 + +0.4 5,479,710 + -0.5 5,479,711 - +0.0 5,479,776 + +1.4 5,479,777 - -1.6 5,479,782 - +0.6 5,479,806 - -0.4 5,479,975 - -1.0 5,479,986 + +0.3 5,479,987 - -2.0 5,480,074 + +0.0 5,480,182 + AO356_24290 0.12 -2.6 5,480,279 + AO356_24290 0.16 -1.0 5,480,280 - AO356_24290 0.16 +0.0 5,480,393 - AO356_24290 0.22 -2.0 5,480,393 - AO356_24290 0.22 -1.0 5,480,543 - AO356_24290 0.29 +1.5 5,480,574 - AO356_24290 0.31 +1.0 5,480,575 + AO356_24290 0.31 -0.4
Or see this region's nucleotide sequence