Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23560 and AO356_23565 are separated by 102 nucleotides AO356_23565 and AO356_23570 overlap by 20 nucleotides
AO356_23560: AO356_23560 - hypothetical protein, at 5,281,149 to 5,283,518
_23560
AO356_23565: AO356_23565 - peptidase, at 5,283,621 to 5,285,405
_23565
AO356_23570: AO356_23570 - hemolysin secretion protein D, at 5,285,386 to 5,286,699
_23570
Position (kb) 5283
5284
5285
5286 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5283.013 kb on - strand, within AO356_23560 at 5283.193 kb on + strand, within AO356_23560 at 5283.194 kb on - strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.219 kb on + strand, within AO356_23560 at 5283.220 kb on - strand, within AO356_23560 at 5283.220 kb on - strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.255 kb on + strand, within AO356_23560 at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.583 kb on + strand at 5283.584 kb on - strand at 5283.584 kb on - strand at 5283.584 kb on - strand at 5283.584 kb on - strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.738 kb on + strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.739 kb on - strand at 5283.740 kb on + strand at 5283.741 kb on - strand at 5283.753 kb on + strand at 5283.754 kb on - strand at 5284.054 kb on - strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.297 kb on + strand, within AO356_23565 at 5284.402 kb on - strand, within AO356_23565 at 5284.530 kb on + strand, within AO356_23565 at 5284.986 kb on + strand, within AO356_23565 at 5284.986 kb on + strand, within AO356_23565 at 5284.987 kb on - strand, within AO356_23565 at 5285.064 kb on + strand, within AO356_23565 at 5285.064 kb on + strand, within AO356_23565 at 5285.065 kb on - strand, within AO356_23565 at 5285.247 kb on - strand at 5285.831 kb on + strand, within AO356_23570 at 5285.960 kb on - strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.311 kb on + strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.312 kb on - strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.365 kb on + strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570 at 5286.366 kb on - strand, within AO356_23570
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 5,283,013 - AO356_23560 0.79 -1.0 5,283,193 + AO356_23560 0.86 -1.0 5,283,194 - AO356_23560 0.86 +1.8 5,283,219 + AO356_23560 0.87 -1.3 5,283,219 + AO356_23560 0.87 +0.6 5,283,219 + AO356_23560 0.87 +0.4 5,283,219 + AO356_23560 0.87 +0.2 5,283,220 - AO356_23560 0.87 -1.0 5,283,220 - AO356_23560 0.87 +1.5 5,283,255 + AO356_23560 0.89 +0.5 5,283,255 + AO356_23560 0.89 -0.5 5,283,255 + AO356_23560 0.89 +0.3 5,283,255 + AO356_23560 0.89 -1.4 5,283,255 + AO356_23560 0.89 +1.0 5,283,583 + +1.0 5,283,583 + -1.5 5,283,583 + +0.2 5,283,583 + -0.2 5,283,584 - +1.8 5,283,584 - +0.0 5,283,584 - -2.0 5,283,584 - -2.0 5,283,738 + -1.7 5,283,738 + +1.0 5,283,738 + +0.4 5,283,738 + +1.4 5,283,738 + +0.8 5,283,738 + -0.5 5,283,738 + -0.4 5,283,739 - -0.2 5,283,739 - +0.0 5,283,739 - -2.5 5,283,739 - +0.4 5,283,739 - +0.0 5,283,740 + +1.0 5,283,741 - -2.0 5,283,753 + -0.3 5,283,754 - -1.5 5,284,054 - AO356_23565 0.24 -2.0 5,284,297 + AO356_23565 0.38 +0.3 5,284,297 + AO356_23565 0.38 -0.6 5,284,297 + AO356_23565 0.38 +1.3 5,284,297 + AO356_23565 0.38 -0.5 5,284,402 - AO356_23565 0.44 +0.3 5,284,530 + AO356_23565 0.51 -0.2 5,284,986 + AO356_23565 0.76 +0.0 5,284,986 + AO356_23565 0.76 +1.0 5,284,987 - AO356_23565 0.77 +1.8 5,285,064 + AO356_23565 0.81 +1.6 5,285,064 + AO356_23565 0.81 +0.9 5,285,065 - AO356_23565 0.81 +3.1 5,285,247 - -1.0 5,285,831 + AO356_23570 0.34 -0.8 5,285,960 - AO356_23570 0.44 +1.2 5,286,311 + AO356_23570 0.70 +0.2 5,286,311 + AO356_23570 0.70 +0.3 5,286,312 - AO356_23570 0.70 +1.0 5,286,312 - AO356_23570 0.70 -1.0 5,286,312 - AO356_23570 0.70 +0.5 5,286,312 - AO356_23570 0.70 -0.2 5,286,365 + AO356_23570 0.75 +2.0 5,286,365 + AO356_23570 0.75 +1.4 5,286,365 + AO356_23570 0.75 -1.0 5,286,366 - AO356_23570 0.75 +0.2 5,286,366 - AO356_23570 0.75 +0.7 5,286,366 - AO356_23570 0.75 +0.6 5,286,366 - AO356_23570 0.75 +0.8 5,286,366 - AO356_23570 0.75 +0.6
Or see this region's nucleotide sequence