Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21980

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21970 and AO356_21975 overlap by 8 nucleotidesAO356_21975 and AO356_21980 are separated by 118 nucleotidesAO356_21980 and AO356_21985 are separated by 154 nucleotides AO356_21970: AO356_21970 - LysR family transcriptional regulator, at 4,918,409 to 4,918,822 _21970 AO356_21975: AO356_21975 - antibiotic biosynthesis monooxygenase, at 4,918,815 to 4,919,450 _21975 AO356_21980: AO356_21980 - amidohydrolase, at 4,919,569 to 4,921,407 _21980 AO356_21985: AO356_21985 - hypothetical protein, at 4,921,562 to 4,922,191 _21985 Position (kb) 4919 4920 4921 4922Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4918.743 kb on + strand, within AO356_21970at 4918.743 kb on + strand, within AO356_21970at 4918.744 kb on - strand, within AO356_21970at 4918.744 kb on - strand, within AO356_21970at 4918.747 kb on + strand, within AO356_21970at 4918.747 kb on + strand, within AO356_21970at 4918.748 kb on - strand, within AO356_21970at 4918.748 kb on - strand, within AO356_21970at 4918.755 kb on + strand, within AO356_21970at 4918.756 kb on - strand, within AO356_21970at 4918.927 kb on - strand, within AO356_21975at 4918.927 kb on - strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.310 kb on + strand, within AO356_21975at 4919.311 kb on - strand, within AO356_21975at 4919.311 kb on - strand, within AO356_21975at 4919.311 kb on - strand, within AO356_21975at 4919.361 kb on + strand, within AO356_21975at 4919.361 kb on + strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.362 kb on - strand, within AO356_21975at 4919.449 kb on - strandat 4919.547 kb on + strandat 4919.547 kb on + strandat 4919.548 kb on - strandat 4919.588 kb on + strandat 4919.797 kb on + strand, within AO356_21980at 4919.797 kb on + strand, within AO356_21980at 4919.797 kb on + strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4919.798 kb on - strand, within AO356_21980at 4920.004 kb on + strand, within AO356_21980at 4920.005 kb on - strand, within AO356_21980at 4920.152 kb on - strand, within AO356_21980at 4920.190 kb on + strand, within AO356_21980at 4920.292 kb on + strand, within AO356_21980at 4920.292 kb on + strand, within AO356_21980at 4920.293 kb on - strand, within AO356_21980at 4920.346 kb on + strand, within AO356_21980at 4920.347 kb on - strand, within AO356_21980at 4920.347 kb on - strand, within AO356_21980at 4920.598 kb on + strand, within AO356_21980at 4920.599 kb on - strand, within AO356_21980at 4920.599 kb on - strand, within AO356_21980at 4920.599 kb on - strand, within AO356_21980at 4920.599 kb on - strand, within AO356_21980at 4920.779 kb on - strand, within AO356_21980at 4920.892 kb on + strand, within AO356_21980at 4920.892 kb on + strand, within AO356_21980at 4920.892 kb on + strand, within AO356_21980at 4920.892 kb on + strand, within AO356_21980at 4920.892 kb on + strand, within AO356_21980at 4920.893 kb on - strand, within AO356_21980at 4920.893 kb on - strand, within AO356_21980at 4920.893 kb on - strand, within AO356_21980at 4920.893 kb on - strand, within AO356_21980at 4920.913 kb on + strand, within AO356_21980at 4920.913 kb on + strand, within AO356_21980at 4921.162 kb on + strand, within AO356_21980at 4921.162 kb on + strand, within AO356_21980at 4921.162 kb on + strand, within AO356_21980at 4921.163 kb on - strand, within AO356_21980at 4921.163 kb on - strand, within AO356_21980at 4921.410 kb on - strandat 4921.410 kb on - strandat 4921.410 kb on - strandat 4921.535 kb on + strandat 4921.535 kb on + strandat 4921.535 kb on + strandat 4921.536 kb on - strandat 4921.538 kb on + strandat 4921.538 kb on + strandat 4921.538 kb on + strandat 4921.580 kb on + strandat 4921.580 kb on + strandat 4921.808 kb on + strand, within AO356_21985at 4921.808 kb on + strand, within AO356_21985at 4921.808 kb on + strand, within AO356_21985at 4921.808 kb on + strand, within AO356_21985at 4921.808 kb on + strand, within AO356_21985at 4921.808 kb on + strand, within AO356_21985at 4921.809 kb on - strand, within AO356_21985at 4921.809 kb on - strand, within AO356_21985at 4921.809 kb on - strand, within AO356_21985at 4921.924 kb on - strand, within AO356_21985at 4922.147 kb on + strandat 4922.147 kb on + strandat 4922.148 kb on - strandat 4922.153 kb on - strandat 4922.168 kb on + strandat 4922.190 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,918,743 + AO356_21970 0.81 -0.3
4,918,743 + AO356_21970 0.81 +0.7
4,918,744 - AO356_21970 0.81 +0.5
4,918,744 - AO356_21970 0.81 +1.3
4,918,747 + AO356_21970 0.82 +1.1
4,918,747 + AO356_21970 0.82 +0.9
4,918,748 - AO356_21970 0.82 +0.3
4,918,748 - AO356_21970 0.82 +0.7
4,918,755 + AO356_21970 0.84 +1.3
4,918,756 - AO356_21970 0.84 -1.3
4,918,927 - AO356_21975 0.18 +1.3
4,918,927 - AO356_21975 0.18 +0.3
4,919,310 + AO356_21975 0.78 -1.7
4,919,310 + AO356_21975 0.78 -0.7
4,919,310 + AO356_21975 0.78 +2.7
4,919,310 + AO356_21975 0.78 +2.0
4,919,310 + AO356_21975 0.78 +0.9
4,919,310 + AO356_21975 0.78 -0.7
4,919,311 - AO356_21975 0.78 +0.4
4,919,311 - AO356_21975 0.78 +0.1
4,919,311 - AO356_21975 0.78 -1.7
4,919,361 + AO356_21975 0.86 +0.3
4,919,361 + AO356_21975 0.86 +0.3
4,919,362 - AO356_21975 0.86 +1.9
4,919,362 - AO356_21975 0.86 +0.0
4,919,362 - AO356_21975 0.86 +0.3
4,919,362 - AO356_21975 0.86 -0.3
4,919,449 - -0.7
4,919,547 + -1.9
4,919,547 + +0.9
4,919,548 - +0.3
4,919,588 + +0.3
4,919,797 + AO356_21980 0.12 -0.1
4,919,797 + AO356_21980 0.12 -1.3
4,919,797 + AO356_21980 0.12 +0.5
4,919,798 - AO356_21980 0.12 -0.7
4,919,798 - AO356_21980 0.12 -0.7
4,919,798 - AO356_21980 0.12 +0.9
4,919,798 - AO356_21980 0.12 +1.3
4,920,004 + AO356_21980 0.24 -0.5
4,920,005 - AO356_21980 0.24 -1.3
4,920,152 - AO356_21980 0.32 -0.1
4,920,190 + AO356_21980 0.34 +0.3
4,920,292 + AO356_21980 0.39 +1.0
4,920,292 + AO356_21980 0.39 +2.3
4,920,293 - AO356_21980 0.39 +0.9
4,920,346 + AO356_21980 0.42 -1.3
4,920,347 - AO356_21980 0.42 +0.0
4,920,347 - AO356_21980 0.42 +0.9
4,920,598 + AO356_21980 0.56 +1.9
4,920,599 - AO356_21980 0.56 +0.4
4,920,599 - AO356_21980 0.56 +0.3
4,920,599 - AO356_21980 0.56 +1.3
4,920,599 - AO356_21980 0.56 -0.7
4,920,779 - AO356_21980 0.66 +1.6
4,920,892 + AO356_21980 0.72 +1.5
4,920,892 + AO356_21980 0.72 -0.1
4,920,892 + AO356_21980 0.72 +0.9
4,920,892 + AO356_21980 0.72 +0.1
4,920,892 + AO356_21980 0.72 -0.9
4,920,893 - AO356_21980 0.72 +0.6
4,920,893 - AO356_21980 0.72 -0.1
4,920,893 - AO356_21980 0.72 -2.3
4,920,893 - AO356_21980 0.72 -0.5
4,920,913 + AO356_21980 0.73 +0.0
4,920,913 + AO356_21980 0.73 +1.2
4,921,162 + AO356_21980 0.87 +1.6
4,921,162 + AO356_21980 0.87 +0.3
4,921,162 + AO356_21980 0.87 -1.3
4,921,163 - AO356_21980 0.87 +1.5
4,921,163 - AO356_21980 0.87 -1.3
4,921,410 - -1.1
4,921,410 - +0.3
4,921,410 - +0.3
4,921,535 + -0.7
4,921,535 + +0.3
4,921,535 + +0.5
4,921,536 - +0.3
4,921,538 + -2.3
4,921,538 + -1.7
4,921,538 + +1.1
4,921,580 + +0.5
4,921,580 + +3.6
4,921,808 + AO356_21985 0.39 +1.3
4,921,808 + AO356_21985 0.39 +0.1
4,921,808 + AO356_21985 0.39 +1.9
4,921,808 + AO356_21985 0.39 +1.2
4,921,808 + AO356_21985 0.39 -0.7
4,921,808 + AO356_21985 0.39 +0.7
4,921,809 - AO356_21985 0.39 +1.1
4,921,809 - AO356_21985 0.39 +0.3
4,921,809 - AO356_21985 0.39 -0.7
4,921,924 - AO356_21985 0.57 -0.3
4,922,147 + +0.2
4,922,147 + +1.6
4,922,148 - +0.5
4,922,153 - +1.9
4,922,168 + +0.3
4,922,190 - -1.7

Or see this region's nucleotide sequence