Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21745

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21735 and AO356_21740 are separated by 296 nucleotidesAO356_21740 and AO356_21745 are separated by 19 nucleotidesAO356_21745 and AO356_21750 are separated by 183 nucleotides AO356_21735: AO356_21735 - LysR family transcriptional regulator, at 4,865,739 to 4,866,623 _21735 AO356_21740: AO356_21740 - cytochrome C, at 4,866,920 to 4,867,291 _21740 AO356_21745: AO356_21745 - FAD-linked oxidoreductase, at 4,867,311 to 4,868,705 _21745 AO356_21750: AO356_21750 - hypothetical protein, at 4,868,889 to 4,869,833 _21750 Position (kb) 4867 4868 4869Strain fitness (log2 ratio) -2 -1 0 1 2at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.454 kb on - strand, within AO356_21735at 4866.516 kb on + strand, within AO356_21735at 4866.517 kb on - strand, within AO356_21735at 4866.554 kb on - strandat 4866.576 kb on + strandat 4866.576 kb on + strandat 4866.610 kb on + strandat 4866.610 kb on + strandat 4866.610 kb on + strandat 4866.611 kb on - strandat 4866.611 kb on - strandat 4866.613 kb on + strandat 4866.614 kb on - strandat 4866.614 kb on - strandat 4866.614 kb on - strandat 4866.614 kb on - strandat 4866.708 kb on - strandat 4866.708 kb on - strandat 4866.814 kb on + strandat 4866.814 kb on + strandat 4866.815 kb on - strandat 4866.815 kb on - strandat 4866.855 kb on + strandat 4866.855 kb on + strandat 4866.919 kb on + strandat 4866.919 kb on + strandat 4866.919 kb on + strandat 4866.919 kb on + strandat 4866.919 kb on + strandat 4866.919 kb on + strandat 4866.919 kb on + strandat 4866.920 kb on - strandat 4867.026 kb on + strand, within AO356_21740at 4867.026 kb on + strand, within AO356_21740at 4867.026 kb on + strand, within AO356_21740at 4867.026 kb on + strand, within AO356_21740at 4867.196 kb on + strand, within AO356_21740at 4867.197 kb on - strand, within AO356_21740at 4867.303 kb on - strandat 4867.305 kb on + strandat 4867.306 kb on - strandat 4867.323 kb on + strandat 4867.738 kb on - strand, within AO356_21745at 4867.800 kb on + strand, within AO356_21745at 4867.801 kb on - strand, within AO356_21745at 4868.182 kb on - strand, within AO356_21745at 4868.182 kb on - strand, within AO356_21745at 4868.277 kb on + strand, within AO356_21745at 4868.277 kb on + strand, within AO356_21745at 4868.296 kb on + strand, within AO356_21745at 4868.296 kb on + strand, within AO356_21745at 4868.297 kb on - strand, within AO356_21745at 4868.316 kb on + strand, within AO356_21745at 4868.317 kb on - strand, within AO356_21745at 4868.317 kb on - strand, within AO356_21745at 4868.317 kb on - strand, within AO356_21745at 4868.544 kb on + strand, within AO356_21745at 4868.544 kb on + strand, within AO356_21745at 4868.545 kb on - strand, within AO356_21745at 4868.824 kb on + strandat 4868.824 kb on + strandat 4868.825 kb on - strandat 4868.825 kb on - strandat 4868.825 kb on - strandat 4868.834 kb on + strandat 4868.834 kb on + strandat 4868.834 kb on + strandat 4868.835 kb on - strandat 4868.989 kb on + strand, within AO356_21750at 4869.088 kb on + strand, within AO356_21750at 4869.088 kb on + strand, within AO356_21750at 4869.089 kb on - strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.118 kb on + strand, within AO356_21750at 4869.119 kb on - strand, within AO356_21750at 4869.119 kb on - strand, within AO356_21750at 4869.119 kb on - strand, within AO356_21750at 4869.121 kb on + strand, within AO356_21750at 4869.122 kb on - strand, within AO356_21750at 4869.235 kb on + strand, within AO356_21750at 4869.235 kb on + strand, within AO356_21750at 4869.235 kb on + strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.236 kb on - strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.301 kb on + strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.302 kb on - strand, within AO356_21750at 4869.308 kb on - strand, within AO356_21750at 4869.308 kb on - strand, within AO356_21750at 4869.346 kb on + strand, within AO356_21750at 4869.346 kb on + strand, within AO356_21750at 4869.347 kb on - strand, within AO356_21750at 4869.508 kb on + strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.509 kb on - strand, within AO356_21750at 4869.551 kb on - strand, within AO356_21750at 4869.640 kb on + strand, within AO356_21750at 4869.640 kb on + strand, within AO356_21750at 4869.640 kb on + strand, within AO356_21750at 4869.641 kb on - strand, within AO356_21750at 4869.641 kb on - strand, within AO356_21750at 4869.649 kb on + strand, within AO356_21750at 4869.649 kb on + strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.650 kb on - strand, within AO356_21750at 4869.652 kb on + strand, within AO356_21750

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,866,454 - AO356_21735 0.81 +0.9
4,866,454 - AO356_21735 0.81 +1.6
4,866,454 - AO356_21735 0.81 +1.3
4,866,454 - AO356_21735 0.81 -0.7
4,866,454 - AO356_21735 0.81 -0.5
4,866,454 - AO356_21735 0.81 -0.1
4,866,454 - AO356_21735 0.81 +0.9
4,866,516 + AO356_21735 0.88 +0.9
4,866,517 - AO356_21735 0.88 -0.7
4,866,554 - +1.1
4,866,576 + +1.6
4,866,576 + +1.9
4,866,610 + +0.1
4,866,610 + +1.9
4,866,610 + +2.5
4,866,611 - +0.9
4,866,611 - -0.7
4,866,613 + +2.6
4,866,614 - +0.3
4,866,614 - +1.9
4,866,614 - +0.9
4,866,614 - -0.7
4,866,708 - +0.9
4,866,708 - +0.1
4,866,814 + +0.3
4,866,814 + -0.7
4,866,815 - -0.3
4,866,815 - +0.3
4,866,855 + -0.7
4,866,855 + -0.7
4,866,919 + -0.7
4,866,919 + -0.7
4,866,919 + +1.5
4,866,919 + +0.3
4,866,919 + +0.3
4,866,919 + -0.7
4,866,919 + +0.9
4,866,920 - +0.9
4,867,026 + AO356_21740 0.28 -0.7
4,867,026 + AO356_21740 0.28 +0.3
4,867,026 + AO356_21740 0.28 -0.7
4,867,026 + AO356_21740 0.28 -0.7
4,867,196 + AO356_21740 0.74 -0.7
4,867,197 - AO356_21740 0.74 +0.1
4,867,303 - +0.3
4,867,305 + +0.1
4,867,306 - -0.7
4,867,323 + -0.7
4,867,738 - AO356_21745 0.31 -0.7
4,867,800 + AO356_21745 0.35 -0.1
4,867,801 - AO356_21745 0.35 +0.1
4,868,182 - AO356_21745 0.62 +0.9
4,868,182 - AO356_21745 0.62 -0.3
4,868,277 + AO356_21745 0.69 -0.3
4,868,277 + AO356_21745 0.69 +0.3
4,868,296 + AO356_21745 0.71 +0.9
4,868,296 + AO356_21745 0.71 -0.1
4,868,297 - AO356_21745 0.71 -0.1
4,868,316 + AO356_21745 0.72 -0.7
4,868,317 - AO356_21745 0.72 -1.3
4,868,317 - AO356_21745 0.72 +0.9
4,868,317 - AO356_21745 0.72 +0.3
4,868,544 + AO356_21745 0.88 +0.7
4,868,544 + AO356_21745 0.88 -0.4
4,868,545 - AO356_21745 0.88 -0.1
4,868,824 + +1.3
4,868,824 + +0.1
4,868,825 - -1.7
4,868,825 - +0.3
4,868,825 - +1.1
4,868,834 + -1.7
4,868,834 + +1.8
4,868,834 + +0.8
4,868,835 - +0.6
4,868,989 + AO356_21750 0.11 +0.3
4,869,088 + AO356_21750 0.21 +0.5
4,869,088 + AO356_21750 0.21 -2.3
4,869,089 - AO356_21750 0.21 -0.5
4,869,118 + AO356_21750 0.24 -0.7
4,869,118 + AO356_21750 0.24 -1.0
4,869,118 + AO356_21750 0.24 -2.7
4,869,118 + AO356_21750 0.24 -0.7
4,869,118 + AO356_21750 0.24 +2.1
4,869,119 - AO356_21750 0.24 +1.7
4,869,119 - AO356_21750 0.24 -1.1
4,869,119 - AO356_21750 0.24 +1.5
4,869,121 + AO356_21750 0.25 +0.2
4,869,122 - AO356_21750 0.25 +1.1
4,869,235 + AO356_21750 0.37 +1.1
4,869,235 + AO356_21750 0.37 -0.1
4,869,235 + AO356_21750 0.37 +1.3
4,869,236 - AO356_21750 0.37 +1.3
4,869,236 - AO356_21750 0.37 -1.1
4,869,236 - AO356_21750 0.37 -2.7
4,869,236 - AO356_21750 0.37 +1.3
4,869,236 - AO356_21750 0.37 -0.0
4,869,236 - AO356_21750 0.37 -1.7
4,869,236 - AO356_21750 0.37 -0.0
4,869,301 + AO356_21750 0.44 +1.8
4,869,301 + AO356_21750 0.44 +0.5
4,869,301 + AO356_21750 0.44 -0.7
4,869,301 + AO356_21750 0.44 +1.0
4,869,302 - AO356_21750 0.44 +0.3
4,869,302 - AO356_21750 0.44 -1.3
4,869,302 - AO356_21750 0.44 +2.0
4,869,302 - AO356_21750 0.44 +0.6
4,869,308 - AO356_21750 0.44 -0.8
4,869,308 - AO356_21750 0.44 +1.1
4,869,346 + AO356_21750 0.48 +0.3
4,869,346 + AO356_21750 0.48 -2.7
4,869,347 - AO356_21750 0.48 +1.6
4,869,508 + AO356_21750 0.66 -1.3
4,869,509 - AO356_21750 0.66 +0.5
4,869,509 - AO356_21750 0.66 -1.3
4,869,509 - AO356_21750 0.66 -0.7
4,869,509 - AO356_21750 0.66 -0.0
4,869,509 - AO356_21750 0.66 -0.5
4,869,509 - AO356_21750 0.66 +0.3
4,869,551 - AO356_21750 0.70 +0.3
4,869,640 + AO356_21750 0.79 -0.1
4,869,640 + AO356_21750 0.79 +0.3
4,869,640 + AO356_21750 0.79 +1.6
4,869,641 - AO356_21750 0.80 -1.3
4,869,641 - AO356_21750 0.80 -0.1
4,869,649 + AO356_21750 0.80 +0.3
4,869,649 + AO356_21750 0.80 +0.3
4,869,650 - AO356_21750 0.81 -0.7
4,869,650 - AO356_21750 0.81 -0.7
4,869,650 - AO356_21750 0.81 -1.3
4,869,650 - AO356_21750 0.81 +0.3
4,869,650 - AO356_21750 0.81 -0.7
4,869,650 - AO356_21750 0.81 +1.3
4,869,652 + AO356_21750 0.81 +1.3

Or see this region's nucleotide sequence