Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21390

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21380 and AO356_21385 are separated by 119 nucleotidesAO356_21385 and AO356_21390 are separated by 62 nucleotidesAO356_21390 and AO356_21395 are separated by 69 nucleotides AO356_21380: AO356_21380 - tRNA-dihydrouridine synthase C, at 4,791,934 to 4,792,893 _21380 AO356_21385: AO356_21385 - heat-shock protein, at 4,793,013 to 4,793,465 _21385 AO356_21390: AO356_21390 - histidine kinase, at 4,793,528 to 4,796,806 _21390 AO356_21395: AO356_21395 - LysR family transcriptional regulator, at 4,796,876 to 4,797,766 _21395 Position (kb) 4793 4794 4795 4796 4797Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4792.862 kb on + strandat 4792.862 kb on + strandat 4792.863 kb on - strandat 4792.863 kb on - strandat 4792.863 kb on - strandat 4792.936 kb on + strandat 4792.936 kb on + strandat 4792.936 kb on + strandat 4792.941 kb on - strandat 4792.941 kb on - strandat 4792.941 kb on - strandat 4793.018 kb on + strandat 4793.018 kb on + strandat 4793.057 kb on - strandat 4793.118 kb on + strand, within AO356_21385at 4793.118 kb on + strand, within AO356_21385at 4793.118 kb on + strand, within AO356_21385at 4793.119 kb on - strand, within AO356_21385at 4793.119 kb on - strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.333 kb on + strand, within AO356_21385at 4793.492 kb on + strandat 4793.492 kb on + strandat 4793.509 kb on + strandat 4793.581 kb on - strandat 4793.589 kb on + strandat 4793.590 kb on - strandat 4793.657 kb on + strandat 4793.784 kb on + strandat 4793.785 kb on - strandat 4793.785 kb on - strandat 4793.894 kb on - strand, within AO356_21390at 4794.366 kb on + strand, within AO356_21390at 4794.366 kb on + strand, within AO356_21390at 4794.618 kb on - strand, within AO356_21390at 4794.823 kb on - strand, within AO356_21390at 4794.955 kb on + strand, within AO356_21390at 4794.956 kb on - strand, within AO356_21390at 4795.049 kb on + strand, within AO356_21390at 4795.050 kb on - strand, within AO356_21390at 4795.050 kb on - strand, within AO356_21390at 4795.063 kb on + strand, within AO356_21390at 4795.063 kb on + strand, within AO356_21390at 4795.063 kb on + strand, within AO356_21390at 4795.064 kb on - strand, within AO356_21390at 4795.064 kb on - strand, within AO356_21390at 4795.064 kb on - strand, within AO356_21390at 4795.064 kb on - strand, within AO356_21390at 4795.128 kb on + strand, within AO356_21390at 4795.129 kb on - strand, within AO356_21390at 4795.693 kb on - strand, within AO356_21390at 4795.718 kb on + strand, within AO356_21390at 4795.718 kb on + strand, within AO356_21390at 4795.718 kb on + strand, within AO356_21390at 4795.719 kb on - strand, within AO356_21390at 4795.725 kb on + strand, within AO356_21390at 4795.737 kb on + strand, within AO356_21390at 4795.737 kb on + strand, within AO356_21390at 4795.737 kb on + strand, within AO356_21390at 4795.738 kb on - strand, within AO356_21390at 4795.738 kb on - strand, within AO356_21390at 4795.738 kb on - strand, within AO356_21390at 4795.738 kb on - strand, within AO356_21390at 4796.029 kb on - strand, within AO356_21390at 4796.029 kb on - strand, within AO356_21390at 4796.219 kb on + strand, within AO356_21390at 4796.219 kb on + strand, within AO356_21390at 4796.219 kb on + strand, within AO356_21390at 4796.220 kb on - strand, within AO356_21390at 4796.247 kb on + strand, within AO356_21390at 4796.247 kb on + strand, within AO356_21390at 4796.247 kb on + strand, within AO356_21390at 4796.248 kb on - strand, within AO356_21390at 4796.248 kb on - strand, within AO356_21390at 4796.426 kb on + strand, within AO356_21390at 4796.578 kb on - strandat 4796.578 kb on - strandat 4796.837 kb on + strandat 4796.837 kb on + strandat 4796.837 kb on + strandat 4796.837 kb on + strandat 4796.838 kb on - strandat 4796.838 kb on - strandat 4796.877 kb on + strandat 4796.877 kb on + strandat 4796.877 kb on + strandat 4796.877 kb on + strandat 4796.877 kb on + strandat 4796.877 kb on + strandat 4796.878 kb on - strandat 4796.878 kb on - strandat 4796.878 kb on - strandat 4796.915 kb on + strandat 4796.916 kb on - strandat 4796.968 kb on + strand, within AO356_21395at 4796.968 kb on + strand, within AO356_21395at 4796.968 kb on + strand, within AO356_21395at 4796.968 kb on + strand, within AO356_21395at 4796.968 kb on + strand, within AO356_21395at 4796.968 kb on + strand, within AO356_21395at 4796.968 kb on + strand, within AO356_21395at 4796.969 kb on - strand, within AO356_21395at 4796.969 kb on - strand, within AO356_21395at 4796.969 kb on - strand, within AO356_21395at 4796.969 kb on - strand, within AO356_21395at 4796.969 kb on - strand, within AO356_21395at 4796.970 kb on + strand, within AO356_21395at 4796.970 kb on + strand, within AO356_21395at 4796.970 kb on + strand, within AO356_21395at 4796.970 kb on + strand, within AO356_21395at 4796.970 kb on + strand, within AO356_21395at 4796.971 kb on - strand, within AO356_21395at 4796.971 kb on - strand, within AO356_21395at 4796.971 kb on - strand, within AO356_21395at 4796.975 kb on + strand, within AO356_21395at 4796.975 kb on + strand, within AO356_21395at 4796.975 kb on + strand, within AO356_21395at 4796.993 kb on + strand, within AO356_21395at 4796.993 kb on + strand, within AO356_21395at 4796.994 kb on - strand, within AO356_21395at 4796.994 kb on - strand, within AO356_21395at 4796.994 kb on - strand, within AO356_21395at 4797.096 kb on + strand, within AO356_21395at 4797.097 kb on - strand, within AO356_21395at 4797.299 kb on + strand, within AO356_21395at 4797.299 kb on + strand, within AO356_21395at 4797.369 kb on + strand, within AO356_21395at 4797.370 kb on - strand, within AO356_21395at 4797.440 kb on + strand, within AO356_21395at 4797.440 kb on + strand, within AO356_21395at 4797.440 kb on + strand, within AO356_21395at 4797.440 kb on + strand, within AO356_21395at 4797.441 kb on - strand, within AO356_21395at 4797.739 kb on + strandat 4797.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,792,862 + -0.4
4,792,862 + +0.2
4,792,863 - -0.6
4,792,863 - -0.6
4,792,863 - -0.2
4,792,936 + -1.0
4,792,936 + -0.4
4,792,936 + +2.2
4,792,941 - -0.3
4,792,941 - -0.6
4,792,941 - +1.0
4,793,018 + -0.2
4,793,018 + +1.0
4,793,057 - +0.4
4,793,118 + AO356_21385 0.23 +0.8
4,793,118 + AO356_21385 0.23 -0.6
4,793,118 + AO356_21385 0.23 +0.8
4,793,119 - AO356_21385 0.23 +0.1
4,793,119 - AO356_21385 0.23 +0.8
4,793,127 + AO356_21385 0.25 +1.4
4,793,127 + AO356_21385 0.25 -1.8
4,793,127 + AO356_21385 0.25 +0.1
4,793,128 - AO356_21385 0.25 +0.4
4,793,128 - AO356_21385 0.25 +1.1
4,793,128 - AO356_21385 0.25 -0.8
4,793,128 - AO356_21385 0.25 -1.9
4,793,333 + AO356_21385 0.71 -1.0
4,793,492 + -0.2
4,793,492 + +0.2
4,793,509 + -0.9
4,793,581 - +1.3
4,793,589 + -0.6
4,793,590 - -0.6
4,793,657 + -0.0
4,793,784 + +1.0
4,793,785 - +0.1
4,793,785 - +2.2
4,793,894 - AO356_21390 0.11 -1.8
4,794,366 + AO356_21390 0.26 +0.4
4,794,366 + AO356_21390 0.26 +0.2
4,794,618 - AO356_21390 0.33 -1.6
4,794,823 - AO356_21390 0.39 +0.4
4,794,955 + AO356_21390 0.44 +1.2
4,794,956 - AO356_21390 0.44 -0.6
4,795,049 + AO356_21390 0.46 +0.4
4,795,050 - AO356_21390 0.46 -0.1
4,795,050 - AO356_21390 0.46 +0.8
4,795,063 + AO356_21390 0.47 -0.1
4,795,063 + AO356_21390 0.47 +0.6
4,795,063 + AO356_21390 0.47 +1.0
4,795,064 - AO356_21390 0.47 +0.2
4,795,064 - AO356_21390 0.47 +2.0
4,795,064 - AO356_21390 0.47 -1.6
4,795,064 - AO356_21390 0.47 -0.0
4,795,128 + AO356_21390 0.49 -0.6
4,795,129 - AO356_21390 0.49 +1.2
4,795,693 - AO356_21390 0.66 -1.2
4,795,718 + AO356_21390 0.67 +0.4
4,795,718 + AO356_21390 0.67 +0.4
4,795,718 + AO356_21390 0.67 -0.3
4,795,719 - AO356_21390 0.67 -0.1
4,795,725 + AO356_21390 0.67 +0.4
4,795,737 + AO356_21390 0.67 +1.2
4,795,737 + AO356_21390 0.67 -0.2
4,795,737 + AO356_21390 0.67 +1.0
4,795,738 - AO356_21390 0.67 +1.3
4,795,738 - AO356_21390 0.67 -0.6
4,795,738 - AO356_21390 0.67 +0.4
4,795,738 - AO356_21390 0.67 -1.2
4,796,029 - AO356_21390 0.76 -0.6
4,796,029 - AO356_21390 0.76 -0.2
4,796,219 + AO356_21390 0.82 +1.0
4,796,219 + AO356_21390 0.82 +3.0
4,796,219 + AO356_21390 0.82 -0.6
4,796,220 - AO356_21390 0.82 -0.0
4,796,247 + AO356_21390 0.83 +0.7
4,796,247 + AO356_21390 0.83 +1.4
4,796,247 + AO356_21390 0.83 -1.4
4,796,248 - AO356_21390 0.83 +1.5
4,796,248 - AO356_21390 0.83 +1.0
4,796,426 + AO356_21390 0.88 +1.0
4,796,578 - -0.3
4,796,578 - +0.1
4,796,837 + +1.2
4,796,837 + +0.4
4,796,837 + -0.6
4,796,837 + -0.2
4,796,838 - -0.6
4,796,838 - +1.0
4,796,877 + +0.4
4,796,877 + +0.6
4,796,877 + +1.4
4,796,877 + +0.4
4,796,877 + +0.7
4,796,877 + +1.7
4,796,878 - -1.6
4,796,878 - +0.4
4,796,878 - +0.1
4,796,915 + +0.0
4,796,916 - -0.6
4,796,968 + AO356_21395 0.10 +0.4
4,796,968 + AO356_21395 0.10 +0.4
4,796,968 + AO356_21395 0.10 -0.6
4,796,968 + AO356_21395 0.10 +0.1
4,796,968 + AO356_21395 0.10 +0.4
4,796,968 + AO356_21395 0.10 +1.2
4,796,968 + AO356_21395 0.10 +1.0
4,796,969 - AO356_21395 0.10 -0.6
4,796,969 - AO356_21395 0.10 +0.4
4,796,969 - AO356_21395 0.10 +2.2
4,796,969 - AO356_21395 0.10 -0.6
4,796,969 - AO356_21395 0.10 +0.8
4,796,970 + AO356_21395 0.11 +0.7
4,796,970 + AO356_21395 0.11 +1.0
4,796,970 + AO356_21395 0.11 -0.6
4,796,970 + AO356_21395 0.11 +2.2
4,796,970 + AO356_21395 0.11 +1.0
4,796,971 - AO356_21395 0.11 +1.4
4,796,971 - AO356_21395 0.11 +1.0
4,796,971 - AO356_21395 0.11 +1.0
4,796,975 + AO356_21395 0.11 +1.4
4,796,975 + AO356_21395 0.11 -0.2
4,796,975 + AO356_21395 0.11 -0.1
4,796,993 + AO356_21395 0.13 -0.2
4,796,993 + AO356_21395 0.13 +1.2
4,796,994 - AO356_21395 0.13 +2.5
4,796,994 - AO356_21395 0.13 +0.4
4,796,994 - AO356_21395 0.13 +0.4
4,797,096 + AO356_21395 0.25 +0.1
4,797,097 - AO356_21395 0.25 -0.6
4,797,299 + AO356_21395 0.47 +0.6
4,797,299 + AO356_21395 0.47 +0.4
4,797,369 + AO356_21395 0.55 +2.0
4,797,370 - AO356_21395 0.55 +0.1
4,797,440 + AO356_21395 0.63 -0.6
4,797,440 + AO356_21395 0.63 +1.7
4,797,440 + AO356_21395 0.63 -0.6
4,797,440 + AO356_21395 0.63 -0.2
4,797,441 - AO356_21395 0.63 +0.2
4,797,739 + -0.4
4,797,740 - +1.7

Or see this region's nucleotide sequence