Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20765 and AO356_20770 are separated by 144 nucleotides AO356_20770 and AO356_20775 are separated by 128 nucleotides AO356_20775 and AO356_20780 are separated by 400 nucleotides
AO356_20765: AO356_20765 - phytanoyl-CoA dioxygenase, at 4,628,342 to 4,629,019
_20765
AO356_20770: AO356_20770 - hypothetical protein, at 4,629,164 to 4,629,787
_20770
AO356_20775: AO356_20775 - short-chain dehydrogenase, at 4,629,916 to 4,630,194
_20775
AO356_20780: AO356_20780 - diguanylate cyclase, at 4,630,595 to 4,632,784
_20780
Position (kb) 4629
4630
4631 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4628.936 kb on - strand, within AO356_20765 at 4628.936 kb on - strand, within AO356_20765 at 4628.985 kb on + strand at 4628.985 kb on + strand at 4629.050 kb on + strand at 4629.050 kb on + strand at 4629.050 kb on + strand at 4629.127 kb on + strand at 4629.127 kb on + strand at 4629.127 kb on + strand at 4629.127 kb on + strand at 4629.128 kb on - strand at 4629.128 kb on - strand at 4629.393 kb on - strand, within AO356_20770 at 4629.413 kb on - strand, within AO356_20770 at 4629.528 kb on - strand, within AO356_20770 at 4629.536 kb on + strand, within AO356_20770 at 4629.537 kb on - strand, within AO356_20770 at 4629.537 kb on - strand, within AO356_20770 at 4629.557 kb on + strand, within AO356_20770 at 4629.557 kb on + strand, within AO356_20770 at 4629.578 kb on + strand, within AO356_20770 at 4629.578 kb on + strand, within AO356_20770 at 4629.578 kb on + strand, within AO356_20770 at 4629.578 kb on + strand, within AO356_20770 at 4629.578 kb on + strand, within AO356_20770 at 4629.578 kb on + strand, within AO356_20770 at 4629.579 kb on - strand, within AO356_20770 at 4629.579 kb on - strand, within AO356_20770 at 4629.579 kb on - strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.632 kb on + strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.633 kb on - strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.636 kb on + strand, within AO356_20770 at 4629.637 kb on - strand, within AO356_20770 at 4629.637 kb on - strand, within AO356_20770 at 4629.767 kb on + strand at 4629.767 kb on + strand at 4629.768 kb on - strand at 4629.768 kb on - strand at 4629.785 kb on + strand at 4629.785 kb on + strand at 4629.786 kb on - strand at 4629.917 kb on + strand at 4629.917 kb on + strand at 4629.917 kb on + strand at 4629.918 kb on - strand at 4629.918 kb on - strand at 4629.918 kb on - strand at 4630.123 kb on + strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.146 kb on - strand, within AO356_20775 at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.184 kb on + strand at 4630.185 kb on - strand at 4630.185 kb on - strand at 4630.194 kb on + strand at 4630.194 kb on + strand at 4630.194 kb on + strand at 4630.194 kb on + strand at 4630.195 kb on - strand at 4630.195 kb on - strand at 4630.195 kb on - strand at 4630.198 kb on + strand at 4630.198 kb on + strand at 4630.198 kb on + strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.199 kb on - strand at 4630.268 kb on + strand at 4630.269 kb on - strand at 4630.269 kb on - strand at 4630.269 kb on - strand at 4630.271 kb on - strand at 4630.326 kb on + strand at 4630.326 kb on + strand at 4630.326 kb on + strand at 4630.326 kb on + strand at 4630.327 kb on - strand at 4630.327 kb on - strand at 4630.330 kb on + strand at 4630.331 kb on - strand at 4630.331 kb on - strand at 4630.331 kb on - strand at 4630.349 kb on + strand at 4630.350 kb on - strand at 4630.350 kb on - strand at 4630.364 kb on + strand at 4630.364 kb on + strand at 4630.364 kb on + strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.365 kb on - strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.371 kb on + strand at 4630.372 kb on - strand at 4630.372 kb on - strand at 4630.394 kb on + strand at 4630.395 kb on - strand at 4630.395 kb on - strand at 4630.417 kb on + strand at 4630.417 kb on + strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.418 kb on - strand at 4630.435 kb on - strand at 4630.523 kb on + strand at 4630.524 kb on - strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.526 kb on + strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.527 kb on - strand at 4630.775 kb on + strand at 4630.775 kb on + strand at 4630.775 kb on + strand at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.907 kb on + strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.908 kb on - strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.909 kb on + strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.910 kb on - strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.911 kb on + strand, within AO356_20780 at 4630.912 kb on - strand, within AO356_20780 at 4630.912 kb on - strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.961 kb on + strand, within AO356_20780 at 4630.962 kb on - strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.976 kb on + strand, within AO356_20780 at 4630.979 kb on - strand, within AO356_20780 at 4630.979 kb on - strand, within AO356_20780 at 4630.979 kb on - strand, within AO356_20780 at 4631.180 kb on + strand, within AO356_20780 at 4631.181 kb on - strand, within AO356_20780 at 4631.181 kb on - strand, within AO356_20780
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 4,628,936 - AO356_20765 0.88 -0.1 4,628,936 - AO356_20765 0.88 +0.0 4,628,985 + +0.3 4,628,985 + -0.6 4,629,050 + -0.1 4,629,050 + -0.1 4,629,050 + -1.0 4,629,127 + -1.0 4,629,127 + +0.3 4,629,127 + +0.2 4,629,127 + -0.6 4,629,128 - +1.4 4,629,128 - -1.0 4,629,393 - AO356_20770 0.37 +0.4 4,629,413 - AO356_20770 0.40 +0.8 4,629,528 - AO356_20770 0.58 -1.6 4,629,536 + AO356_20770 0.60 +0.4 4,629,537 - AO356_20770 0.60 +0.1 4,629,537 - AO356_20770 0.60 +0.3 4,629,557 + AO356_20770 0.63 -0.6 4,629,557 + AO356_20770 0.63 +0.8 4,629,578 + AO356_20770 0.66 +0.1 4,629,578 + AO356_20770 0.66 +1.2 4,629,578 + AO356_20770 0.66 +1.8 4,629,578 + AO356_20770 0.66 +0.4 4,629,578 + AO356_20770 0.66 -0.1 4,629,578 + AO356_20770 0.66 -0.3 4,629,579 - AO356_20770 0.67 -0.6 4,629,579 - AO356_20770 0.67 +1.3 4,629,579 - AO356_20770 0.67 -0.2 4,629,632 + AO356_20770 0.75 +0.4 4,629,632 + AO356_20770 0.75 +2.3 4,629,632 + AO356_20770 0.75 -1.6 4,629,632 + AO356_20770 0.75 +1.4 4,629,632 + AO356_20770 0.75 -0.6 4,629,633 - AO356_20770 0.75 +1.0 4,629,633 - AO356_20770 0.75 +1.0 4,629,633 - AO356_20770 0.75 +1.8 4,629,633 - AO356_20770 0.75 +1.2 4,629,633 - AO356_20770 0.75 -0.6 4,629,633 - AO356_20770 0.75 +0.8 4,629,633 - AO356_20770 0.75 -0.9 4,629,636 + AO356_20770 0.76 +0.0 4,629,636 + AO356_20770 0.76 -0.3 4,629,636 + AO356_20770 0.76 +0.8 4,629,636 + AO356_20770 0.76 +0.3 4,629,636 + AO356_20770 0.76 -1.0 4,629,637 - AO356_20770 0.76 +0.8 4,629,637 - AO356_20770 0.76 -0.6 4,629,767 + +0.2 4,629,767 + +1.4 4,629,768 - -0.9 4,629,768 - +1.0 4,629,785 + +0.8 4,629,785 + +0.9 4,629,786 - -0.6 4,629,917 + +0.4 4,629,917 + -0.4 4,629,917 + +0.6 4,629,918 - +0.1 4,629,918 - +0.1 4,629,918 - +0.2 4,630,123 + AO356_20775 0.74 -0.2 4,630,146 - AO356_20775 0.82 +1.6 4,630,146 - AO356_20775 0.82 +3.0 4,630,146 - AO356_20775 0.82 -0.9 4,630,146 - AO356_20775 0.82 -0.9 4,630,184 + +0.8 4,630,184 + +0.4 4,630,184 + +0.8 4,630,184 + -0.1 4,630,184 + -1.0 4,630,184 + +0.4 4,630,184 + -0.3 4,630,185 - +0.7 4,630,185 - +1.2 4,630,194 + -0.6 4,630,194 + +0.7 4,630,194 + -0.6 4,630,194 + -0.1 4,630,195 - +0.6 4,630,195 - +0.9 4,630,195 - +0.4 4,630,198 + -1.9 4,630,198 + -0.6 4,630,198 + +1.0 4,630,199 - +0.4 4,630,199 - +0.9 4,630,199 - +0.6 4,630,199 - +0.5 4,630,199 - -1.6 4,630,199 - -1.6 4,630,268 + -1.1 4,630,269 - +0.7 4,630,269 - +0.3 4,630,269 - -1.1 4,630,271 - +1.3 4,630,326 + -0.2 4,630,326 + +0.9 4,630,326 + -0.1 4,630,326 + -1.6 4,630,327 - +0.0 4,630,327 - -2.1 4,630,330 + -0.6 4,630,331 - +0.1 4,630,331 - +0.0 4,630,331 - -1.3 4,630,349 + +0.1 4,630,350 - +1.3 4,630,350 - -0.1 4,630,364 + +1.0 4,630,364 + -1.3 4,630,364 + -0.6 4,630,365 - -1.1 4,630,365 - +1.4 4,630,365 - +0.4 4,630,365 - +1.4 4,630,365 - +2.4 4,630,371 + +0.2 4,630,371 + -0.6 4,630,371 + +1.1 4,630,371 + -1.1 4,630,371 + +0.4 4,630,371 + -0.1 4,630,371 + +0.6 4,630,372 - +3.0 4,630,372 - +2.3 4,630,394 + -0.6 4,630,395 - +1.0 4,630,395 - -0.2 4,630,417 + -1.1 4,630,417 + -0.6 4,630,418 - -0.6 4,630,418 - -1.4 4,630,418 - -0.6 4,630,418 - +0.6 4,630,418 - +1.8 4,630,418 - +0.2 4,630,418 - +0.2 4,630,435 - +1.1 4,630,523 + +1.3 4,630,524 - +0.3 4,630,526 + -1.6 4,630,526 + -1.6 4,630,526 + -1.3 4,630,526 + +0.4 4,630,526 + -1.6 4,630,526 + +0.3 4,630,526 + -0.6 4,630,526 + +0.8 4,630,526 + +1.3 4,630,526 + -2.1 4,630,527 - -0.3 4,630,527 - -0.9 4,630,527 - -0.7 4,630,527 - +0.5 4,630,527 - -0.1 4,630,775 + -0.6 4,630,775 + -0.1 4,630,775 + +0.4 4,630,907 + AO356_20780 0.14 +0.7 4,630,907 + AO356_20780 0.14 -0.2 4,630,907 + AO356_20780 0.14 +0.0 4,630,907 + AO356_20780 0.14 +0.2 4,630,907 + AO356_20780 0.14 -1.2 4,630,907 + AO356_20780 0.14 -1.1 4,630,907 + AO356_20780 0.14 +0.4 4,630,907 + AO356_20780 0.14 -0.6 4,630,907 + AO356_20780 0.14 +0.4 4,630,907 + AO356_20780 0.14 -0.6 4,630,907 + AO356_20780 0.14 +2.0 4,630,907 + AO356_20780 0.14 -1.0 4,630,907 + AO356_20780 0.14 +0.3 4,630,908 - AO356_20780 0.14 +0.8 4,630,908 - AO356_20780 0.14 -0.7 4,630,908 - AO356_20780 0.14 +0.2 4,630,908 - AO356_20780 0.14 +0.4 4,630,909 + AO356_20780 0.14 +2.0 4,630,909 + AO356_20780 0.14 +0.7 4,630,909 + AO356_20780 0.14 +0.8 4,630,909 + AO356_20780 0.14 -1.1 4,630,910 - AO356_20780 0.14 -0.1 4,630,910 - AO356_20780 0.14 -0.5 4,630,910 - AO356_20780 0.14 +1.0 4,630,910 - AO356_20780 0.14 -1.0 4,630,910 - AO356_20780 0.14 -2.1 4,630,910 - AO356_20780 0.14 -1.0 4,630,910 - AO356_20780 0.14 +0.7 4,630,910 - AO356_20780 0.14 +0.4 4,630,911 + AO356_20780 0.14 -0.3 4,630,911 + AO356_20780 0.14 -0.6 4,630,911 + AO356_20780 0.14 +0.4 4,630,911 + AO356_20780 0.14 -0.3 4,630,911 + AO356_20780 0.14 +0.4 4,630,912 - AO356_20780 0.14 +0.4 4,630,912 - AO356_20780 0.14 -1.1 4,630,961 + AO356_20780 0.17 +2.3 4,630,961 + AO356_20780 0.17 -0.1 4,630,961 + AO356_20780 0.17 +0.0 4,630,961 + AO356_20780 0.17 +0.4 4,630,962 - AO356_20780 0.17 +0.2 4,630,976 + AO356_20780 0.17 +0.4 4,630,976 + AO356_20780 0.17 +0.0 4,630,976 + AO356_20780 0.17 +0.2 4,630,976 + AO356_20780 0.17 +0.4 4,630,979 - AO356_20780 0.18 -1.6 4,630,979 - AO356_20780 0.18 +1.3 4,630,979 - AO356_20780 0.18 +0.2 4,631,180 + AO356_20780 0.27 +0.4 4,631,181 - AO356_20780 0.27 +0.2 4,631,181 - AO356_20780 0.27 -0.6
Or see this region's nucleotide sequence