Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20420 and AO356_20425 are separated by 308 nucleotides AO356_20425 and AO356_20430 are separated by 78 nucleotides
AO356_20420: AO356_20420 - enoyl-CoA hydratase, at 4,560,743 to 4,561,432
_20420
AO356_20425: AO356_20425 - tRNA-Ser, at 4,561,741 to 4,561,830
_20425
AO356_20430: AO356_20430 - hypothetical protein, at 4,561,909 to 4,562,268
_20430
Position (kb) 4561
4562
4563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4561.413 kb on + strand at 4561.448 kb on - strand at 4561.448 kb on - strand at 4561.448 kb on - strand at 4561.448 kb on - strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.570 kb on + strand at 4561.584 kb on + strand at 4561.908 kb on + strand at 4561.957 kb on + strand, within AO356_20430 at 4561.957 kb on + strand, within AO356_20430 at 4561.958 kb on - strand, within AO356_20430 at 4561.958 kb on - strand, within AO356_20430 at 4561.958 kb on - strand, within AO356_20430 at 4561.960 kb on + strand, within AO356_20430 at 4561.960 kb on + strand, within AO356_20430 at 4561.960 kb on + strand, within AO356_20430 at 4561.979 kb on + strand, within AO356_20430 at 4561.979 kb on + strand, within AO356_20430 at 4561.980 kb on - strand, within AO356_20430 at 4562.008 kb on - strand, within AO356_20430 at 4562.079 kb on + strand, within AO356_20430 at 4562.106 kb on + strand, within AO356_20430 at 4562.131 kb on + strand, within AO356_20430 at 4562.132 kb on - strand, within AO356_20430 at 4562.132 kb on - strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.145 kb on - strand, within AO356_20430 at 4562.217 kb on + strand, within AO356_20430 at 4562.218 kb on - strand, within AO356_20430 at 4562.218 kb on - strand, within AO356_20430 at 4562.281 kb on + strand at 4562.281 kb on + strand at 4562.294 kb on - strand at 4562.320 kb on + strand at 4562.341 kb on - strand at 4562.514 kb on + strand at 4562.514 kb on + strand at 4562.514 kb on + strand at 4562.547 kb on + strand at 4562.737 kb on + strand at 4562.737 kb on + strand at 4562.760 kb on - strand at 4562.864 kb on + strand at 4563.050 kb on + strand at 4563.051 kb on - strand at 4563.151 kb on + strand at 4563.166 kb on + strand at 4563.187 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 4,561,413 + -0.2 4,561,448 - +1.4 4,561,448 - -1.6 4,561,448 - +0.6 4,561,448 - -0.6 4,561,568 + +0.9 4,561,568 + +0.4 4,561,568 + -0.3 4,561,568 + -0.3 4,561,568 + +1.0 4,561,568 + +0.1 4,561,568 + -0.4 4,561,568 + +1.7 4,561,568 + +0.0 4,561,570 + +1.0 4,561,584 + -1.6 4,561,908 + +0.3 4,561,957 + AO356_20430 0.13 +0.4 4,561,957 + AO356_20430 0.13 +0.8 4,561,958 - AO356_20430 0.14 +0.2 4,561,958 - AO356_20430 0.14 +1.3 4,561,958 - AO356_20430 0.14 +0.4 4,561,960 + AO356_20430 0.14 -1.2 4,561,960 + AO356_20430 0.14 -0.6 4,561,960 + AO356_20430 0.14 -0.2 4,561,979 + AO356_20430 0.19 +0.3 4,561,979 + AO356_20430 0.19 +0.7 4,561,980 - AO356_20430 0.20 +0.4 4,562,008 - AO356_20430 0.28 -0.3 4,562,079 + AO356_20430 0.47 +1.0 4,562,106 + AO356_20430 0.55 -1.3 4,562,131 + AO356_20430 0.62 +0.6 4,562,132 - AO356_20430 0.62 -1.3 4,562,132 - AO356_20430 0.62 +0.8 4,562,144 + AO356_20430 0.65 +0.4 4,562,144 + AO356_20430 0.65 -1.1 4,562,144 + AO356_20430 0.65 -0.6 4,562,144 + AO356_20430 0.65 +0.7 4,562,145 - AO356_20430 0.66 -0.8 4,562,217 + AO356_20430 0.86 +1.3 4,562,218 - AO356_20430 0.86 +0.9 4,562,218 - AO356_20430 0.86 -0.0 4,562,281 + -2.9 4,562,281 + +1.6 4,562,294 - -0.6 4,562,320 + +0.2 4,562,341 - -0.9 4,562,514 + -0.6 4,562,514 + -0.1 4,562,514 + +0.4 4,562,547 + +0.0 4,562,737 + +0.4 4,562,737 + +1.0 4,562,760 - +0.7 4,562,864 + +0.8 4,563,050 + -0.3 4,563,051 - +0.4 4,563,151 + +0.7 4,563,166 + +0.2 4,563,187 + -0.4
Or see this region's nucleotide sequence