Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20275

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20265 and AO356_20270 are separated by 189 nucleotidesAO356_20270 and AO356_20275 are separated by 5 nucleotidesAO356_20275 and AO356_20280 are separated by 189 nucleotides AO356_20265: AO356_20265 - hypothetical protein, at 4,529,664 to 4,530,008 _20265 AO356_20270: AO356_20270 - GNAT family acetyltransferase, at 4,530,198 to 4,530,680 _20270 AO356_20275: AO356_20275 - glutathione S-transferase, at 4,530,686 to 4,531,318 _20275 AO356_20280: AO356_20280 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data), at 4,531,508 to 4,532,488 _20280 Position (kb) 4530 4531 4532Strain fitness (log2 ratio) -1 0 1 2 3at 4529.762 kb on + strand, within AO356_20265at 4529.762 kb on + strand, within AO356_20265at 4529.763 kb on - strand, within AO356_20265at 4529.763 kb on - strand, within AO356_20265at 4529.763 kb on - strand, within AO356_20265at 4530.124 kb on + strandat 4530.125 kb on - strandat 4530.136 kb on + strandat 4530.137 kb on - strandat 4530.162 kb on + strandat 4530.162 kb on + strandat 4530.163 kb on - strandat 4530.165 kb on + strandat 4530.165 kb on + strandat 4530.165 kb on + strandat 4530.166 kb on - strandat 4530.166 kb on - strandat 4530.166 kb on - strandat 4530.185 kb on - strandat 4530.411 kb on + strand, within AO356_20270at 4530.411 kb on + strand, within AO356_20270at 4530.432 kb on - strand, within AO356_20270at 4530.441 kb on + strand, within AO356_20270at 4530.441 kb on + strand, within AO356_20270at 4530.456 kb on + strand, within AO356_20270at 4530.456 kb on + strand, within AO356_20270at 4530.456 kb on + strand, within AO356_20270at 4530.456 kb on + strand, within AO356_20270at 4530.456 kb on + strand, within AO356_20270at 4530.457 kb on - strand, within AO356_20270at 4530.457 kb on - strand, within AO356_20270at 4530.457 kb on - strand, within AO356_20270at 4530.457 kb on - strand, within AO356_20270at 4530.592 kb on - strand, within AO356_20270at 4530.747 kb on + strandat 4530.747 kb on + strandat 4530.803 kb on + strand, within AO356_20275at 4530.804 kb on - strand, within AO356_20275at 4530.855 kb on + strand, within AO356_20275at 4530.855 kb on + strand, within AO356_20275at 4530.855 kb on + strand, within AO356_20275at 4530.856 kb on - strand, within AO356_20275at 4530.982 kb on - strand, within AO356_20275at 4531.061 kb on + strand, within AO356_20275at 4531.103 kb on + strand, within AO356_20275at 4531.103 kb on + strand, within AO356_20275at 4531.103 kb on + strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.104 kb on - strand, within AO356_20275at 4531.108 kb on + strand, within AO356_20275at 4531.108 kb on + strand, within AO356_20275at 4531.108 kb on + strand, within AO356_20275at 4531.330 kb on + strandat 4531.330 kb on + strandat 4531.331 kb on - strandat 4531.358 kb on + strandat 4531.359 kb on - strandat 4531.359 kb on - strandat 4531.393 kb on - strandat 4531.433 kb on - strandat 4531.433 kb on - strandat 4531.435 kb on - strandat 4531.435 kb on - strandat 4531.435 kb on - strandat 4531.436 kb on + strandat 4531.462 kb on + strandat 4531.462 kb on + strandat 4531.463 kb on - strandat 4531.463 kb on - strandat 4531.463 kb on - strandat 4531.465 kb on - strandat 4531.465 kb on - strandat 4531.465 kb on - strandat 4531.559 kb on + strandat 4531.559 kb on + strandat 4531.560 kb on - strandat 4531.824 kb on + strand, within AO356_20280at 4531.825 kb on - strand, within AO356_20280at 4531.825 kb on - strand, within AO356_20280at 4532.033 kb on - strand, within AO356_20280at 4532.246 kb on + strand, within AO356_20280at 4532.246 kb on + strand, within AO356_20280at 4532.247 kb on - strand, within AO356_20280at 4532.247 kb on - strand, within AO356_20280at 4532.295 kb on + strand, within AO356_20280at 4532.295 kb on + strand, within AO356_20280at 4532.295 kb on + strand, within AO356_20280at 4532.296 kb on - strand, within AO356_20280

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,529,762 + AO356_20265 0.28 -1.0
4,529,762 + AO356_20265 0.28 -1.0
4,529,763 - AO356_20265 0.29 -1.3
4,529,763 - AO356_20265 0.29 +1.2
4,529,763 - AO356_20265 0.29 +0.1
4,530,124 + -0.7
4,530,125 - +0.5
4,530,136 + +0.5
4,530,137 - +1.0
4,530,162 + +0.0
4,530,162 + +1.4
4,530,163 - +1.0
4,530,165 + -0.6
4,530,165 + -0.1
4,530,165 + +0.4
4,530,166 - +1.0
4,530,166 - +0.4
4,530,166 - -0.6
4,530,185 - -0.4
4,530,411 + AO356_20270 0.44 +2.0
4,530,411 + AO356_20270 0.44 +0.1
4,530,432 - AO356_20270 0.48 +1.3
4,530,441 + AO356_20270 0.50 +1.5
4,530,441 + AO356_20270 0.50 +1.4
4,530,456 + AO356_20270 0.53 -1.0
4,530,456 + AO356_20270 0.53 -0.6
4,530,456 + AO356_20270 0.53 -0.1
4,530,456 + AO356_20270 0.53 +2.4
4,530,456 + AO356_20270 0.53 -0.6
4,530,457 - AO356_20270 0.54 -1.0
4,530,457 - AO356_20270 0.54 -0.6
4,530,457 - AO356_20270 0.54 +2.4
4,530,457 - AO356_20270 0.54 +1.6
4,530,592 - AO356_20270 0.82 +2.3
4,530,747 + +0.9
4,530,747 + +1.7
4,530,803 + AO356_20275 0.18 +2.3
4,530,804 - AO356_20275 0.19 -0.4
4,530,855 + AO356_20275 0.27 -0.6
4,530,855 + AO356_20275 0.27 +0.5
4,530,855 + AO356_20275 0.27 +3.4
4,530,856 - AO356_20275 0.27 +0.4
4,530,982 - AO356_20275 0.47 +0.7
4,531,061 + AO356_20275 0.59 +0.8
4,531,103 + AO356_20275 0.66 +0.8
4,531,103 + AO356_20275 0.66 +0.0
4,531,103 + AO356_20275 0.66 +0.9
4,531,104 - AO356_20275 0.66 -0.6
4,531,104 - AO356_20275 0.66 +1.9
4,531,104 - AO356_20275 0.66 -0.4
4,531,104 - AO356_20275 0.66 -0.6
4,531,104 - AO356_20275 0.66 +0.4
4,531,104 - AO356_20275 0.66 +1.0
4,531,104 - AO356_20275 0.66 +0.4
4,531,108 + AO356_20275 0.67 +0.2
4,531,108 + AO356_20275 0.67 +1.4
4,531,108 + AO356_20275 0.67 +1.9
4,531,330 + +1.4
4,531,330 + -0.6
4,531,331 - -0.3
4,531,358 + -1.6
4,531,359 - +0.0
4,531,359 - +0.4
4,531,393 - +0.6
4,531,433 - -0.6
4,531,433 - +0.4
4,531,435 - -0.6
4,531,435 - +1.0
4,531,435 - -0.6
4,531,436 + +0.4
4,531,462 + -0.6
4,531,462 + +0.7
4,531,463 - -0.4
4,531,463 - +0.4
4,531,463 - +1.0
4,531,465 - -1.4
4,531,465 - +1.8
4,531,465 - +0.4
4,531,559 + +0.7
4,531,559 + -1.6
4,531,560 - +1.3
4,531,824 + AO356_20280 0.32 +1.0
4,531,825 - AO356_20280 0.32 -0.7
4,531,825 - AO356_20280 0.32 -0.2
4,532,033 - AO356_20280 0.54 +1.2
4,532,246 + AO356_20280 0.75 +0.4
4,532,246 + AO356_20280 0.75 +1.0
4,532,247 - AO356_20280 0.75 +1.1
4,532,247 - AO356_20280 0.75 -0.6
4,532,295 + AO356_20280 0.80 +0.4
4,532,295 + AO356_20280 0.80 -0.6
4,532,295 + AO356_20280 0.80 +0.4
4,532,296 - AO356_20280 0.80 +0.4

Or see this region's nucleotide sequence