Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20105

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20095 and AO356_20100 are separated by 279 nucleotidesAO356_20100 and AO356_20105 overlap by 4 nucleotidesAO356_20105 and AO356_20110 overlap by 1 nucleotidesAO356_20110 and AO356_20115 are separated by 20 nucleotides AO356_20095: AO356_20095 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 4,495,464 to 4,496,483 _20095 AO356_20100: AO356_20100 - (2Fe-2S)-binding protein, at 4,496,763 to 4,497,233 _20100 AO356_20105: AO356_20105 - acylaldehyde oxidase, at 4,497,230 to 4,499,545 _20105 AO356_20110: AO356_20110 - hypothetical protein, at 4,499,545 to 4,500,516 _20110 AO356_20115: AO356_20115 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 4,500,537 to 4,501,127 _20115 Position (kb) 4497 4498 4499 4500Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4496.598 kb on - strandat 4496.606 kb on - strandat 4496.627 kb on + strandat 4496.628 kb on - strandat 4496.628 kb on - strandat 4496.662 kb on + strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.745 kb on + strandat 4496.746 kb on - strandat 4496.746 kb on - strandat 4496.746 kb on - strandat 4496.746 kb on - strandat 4496.768 kb on + strandat 4496.846 kb on - strand, within AO356_20100at 4496.846 kb on - strand, within AO356_20100at 4497.057 kb on + strand, within AO356_20100at 4497.057 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.172 kb on - strand, within AO356_20100at 4497.172 kb on - strand, within AO356_20100at 4497.172 kb on - strand, within AO356_20100at 4497.413 kb on + strandat 4497.413 kb on + strandat 4497.414 kb on - strandat 4497.414 kb on - strandat 4497.617 kb on + strand, within AO356_20105at 4497.617 kb on + strand, within AO356_20105at 4497.759 kb on - strand, within AO356_20105at 4497.843 kb on - strand, within AO356_20105at 4497.938 kb on + strand, within AO356_20105at 4497.965 kb on + strand, within AO356_20105at 4497.965 kb on + strand, within AO356_20105at 4498.039 kb on - strand, within AO356_20105at 4498.083 kb on + strand, within AO356_20105at 4498.089 kb on + strand, within AO356_20105at 4498.169 kb on + strand, within AO356_20105at 4498.170 kb on - strand, within AO356_20105at 4498.292 kb on + strand, within AO356_20105at 4498.292 kb on + strand, within AO356_20105at 4498.292 kb on + strand, within AO356_20105at 4498.293 kb on - strand, within AO356_20105at 4498.293 kb on - strand, within AO356_20105at 4498.295 kb on + strand, within AO356_20105at 4498.295 kb on + strand, within AO356_20105at 4498.295 kb on + strand, within AO356_20105at 4498.296 kb on - strand, within AO356_20105at 4498.296 kb on - strand, within AO356_20105at 4498.296 kb on - strand, within AO356_20105at 4498.296 kb on - strand, within AO356_20105at 4498.592 kb on + strand, within AO356_20105at 4498.592 kb on + strand, within AO356_20105at 4498.593 kb on - strand, within AO356_20105at 4498.593 kb on - strand, within AO356_20105at 4498.593 kb on - strand, within AO356_20105at 4498.593 kb on - strand, within AO356_20105at 4498.606 kb on - strand, within AO356_20105at 4498.616 kb on + strand, within AO356_20105at 4498.616 kb on + strand, within AO356_20105at 4498.617 kb on - strand, within AO356_20105at 4498.645 kb on + strand, within AO356_20105at 4498.645 kb on + strand, within AO356_20105at 4498.674 kb on + strand, within AO356_20105at 4498.675 kb on - strand, within AO356_20105at 4498.734 kb on + strand, within AO356_20105at 4498.734 kb on + strand, within AO356_20105at 4498.735 kb on - strand, within AO356_20105at 4498.760 kb on + strand, within AO356_20105at 4498.761 kb on - strand, within AO356_20105at 4498.761 kb on - strand, within AO356_20105at 4498.913 kb on + strand, within AO356_20105at 4498.914 kb on - strand, within AO356_20105at 4498.914 kb on - strand, within AO356_20105at 4498.942 kb on + strand, within AO356_20105at 4498.943 kb on - strand, within AO356_20105at 4498.943 kb on - strand, within AO356_20105at 4498.943 kb on - strand, within AO356_20105at 4498.957 kb on + strand, within AO356_20105at 4498.979 kb on + strand, within AO356_20105at 4498.980 kb on - strand, within AO356_20105at 4499.011 kb on + strand, within AO356_20105at 4499.108 kb on + strand, within AO356_20105at 4499.109 kb on - strand, within AO356_20105at 4499.109 kb on - strand, within AO356_20105at 4499.109 kb on - strand, within AO356_20105at 4499.123 kb on + strand, within AO356_20105at 4499.123 kb on + strand, within AO356_20105at 4499.124 kb on - strand, within AO356_20105at 4499.310 kb on + strand, within AO356_20105at 4499.310 kb on + strand, within AO356_20105at 4499.310 kb on + strand, within AO356_20105at 4499.310 kb on + strand, within AO356_20105at 4499.311 kb on - strand, within AO356_20105at 4499.311 kb on - strand, within AO356_20105at 4499.329 kb on + strandat 4499.330 kb on - strandat 4499.330 kb on - strandat 4499.333 kb on + strandat 4499.333 kb on + strandat 4499.333 kb on + strandat 4499.333 kb on + strandat 4499.334 kb on - strandat 4499.334 kb on - strandat 4499.334 kb on - strandat 4499.334 kb on - strandat 4499.794 kb on + strand, within AO356_20110at 4499.795 kb on - strand, within AO356_20110at 4499.795 kb on - strand, within AO356_20110at 4500.077 kb on - strand, within AO356_20110at 4500.077 kb on - strand, within AO356_20110at 4500.077 kb on - strand, within AO356_20110at 4500.145 kb on + strand, within AO356_20110at 4500.145 kb on + strand, within AO356_20110at 4500.146 kb on - strand, within AO356_20110at 4500.304 kb on + strand, within AO356_20110at 4500.365 kb on + strand, within AO356_20110at 4500.365 kb on + strand, within AO356_20110at 4500.365 kb on + strand, within AO356_20110at 4500.366 kb on - strand, within AO356_20110at 4500.366 kb on - strand, within AO356_20110at 4500.366 kb on - strand, within AO356_20110at 4500.366 kb on - strand, within AO356_20110at 4500.429 kb on + strandat 4500.515 kb on - strandat 4500.536 kb on + strandat 4500.536 kb on + strandat 4500.536 kb on + strandat 4500.536 kb on + strandat 4500.536 kb on + strandat 4500.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,496,598 - -1.6
4,496,606 - +0.4
4,496,627 + -1.6
4,496,628 - -0.6
4,496,628 - +0.4
4,496,662 + +2.3
4,496,663 - -0.6
4,496,663 - -0.6
4,496,663 - -1.1
4,496,663 - -0.6
4,496,663 - -0.6
4,496,745 + +0.0
4,496,746 - +1.4
4,496,746 - -0.6
4,496,746 - +0.2
4,496,746 - +0.4
4,496,768 + +1.3
4,496,846 - AO356_20100 0.18 -0.8
4,496,846 - AO356_20100 0.18 +1.4
4,497,057 + AO356_20100 0.62 -1.2
4,497,057 + AO356_20100 0.62 -0.0
4,497,171 + AO356_20100 0.87 +1.0
4,497,171 + AO356_20100 0.87 -0.6
4,497,171 + AO356_20100 0.87 -0.6
4,497,171 + AO356_20100 0.87 -0.3
4,497,171 + AO356_20100 0.87 +0.8
4,497,172 - AO356_20100 0.87 -0.1
4,497,172 - AO356_20100 0.87 +0.4
4,497,172 - AO356_20100 0.87 -1.3
4,497,413 + +1.0
4,497,413 + +1.9
4,497,414 - +1.3
4,497,414 - -0.1
4,497,617 + AO356_20105 0.17 +0.0
4,497,617 + AO356_20105 0.17 +0.4
4,497,759 - AO356_20105 0.23 +0.4
4,497,843 - AO356_20105 0.26 +1.8
4,497,938 + AO356_20105 0.31 -0.1
4,497,965 + AO356_20105 0.32 +1.0
4,497,965 + AO356_20105 0.32 +1.3
4,498,039 - AO356_20105 0.35 +0.2
4,498,083 + AO356_20105 0.37 +1.8
4,498,089 + AO356_20105 0.37 +1.4
4,498,169 + AO356_20105 0.41 -1.1
4,498,170 - AO356_20105 0.41 +0.2
4,498,292 + AO356_20105 0.46 -0.1
4,498,292 + AO356_20105 0.46 -0.6
4,498,292 + AO356_20105 0.46 +1.0
4,498,293 - AO356_20105 0.46 -2.1
4,498,293 - AO356_20105 0.46 -0.1
4,498,295 + AO356_20105 0.46 -0.8
4,498,295 + AO356_20105 0.46 -1.6
4,498,295 + AO356_20105 0.46 -1.6
4,498,296 - AO356_20105 0.46 -0.6
4,498,296 - AO356_20105 0.46 +0.4
4,498,296 - AO356_20105 0.46 -0.6
4,498,296 - AO356_20105 0.46 +1.0
4,498,592 + AO356_20105 0.59 -0.1
4,498,592 + AO356_20105 0.59 +0.4
4,498,593 - AO356_20105 0.59 -0.6
4,498,593 - AO356_20105 0.59 +1.0
4,498,593 - AO356_20105 0.59 +0.2
4,498,593 - AO356_20105 0.59 +1.3
4,498,606 - AO356_20105 0.59 -1.0
4,498,616 + AO356_20105 0.60 +0.0
4,498,616 + AO356_20105 0.60 -1.6
4,498,617 - AO356_20105 0.60 +2.8
4,498,645 + AO356_20105 0.61 +0.4
4,498,645 + AO356_20105 0.61 +1.0
4,498,674 + AO356_20105 0.62 -0.6
4,498,675 - AO356_20105 0.62 -1.1
4,498,734 + AO356_20105 0.65 -0.6
4,498,734 + AO356_20105 0.65 +1.0
4,498,735 - AO356_20105 0.65 +0.8
4,498,760 + AO356_20105 0.66 +0.0
4,498,761 - AO356_20105 0.66 +1.0
4,498,761 - AO356_20105 0.66 +0.0
4,498,913 + AO356_20105 0.73 +0.3
4,498,914 - AO356_20105 0.73 +1.0
4,498,914 - AO356_20105 0.73 -0.6
4,498,942 + AO356_20105 0.74 +2.3
4,498,943 - AO356_20105 0.74 -2.9
4,498,943 - AO356_20105 0.74 +1.4
4,498,943 - AO356_20105 0.74 +2.9
4,498,957 + AO356_20105 0.75 +1.0
4,498,979 + AO356_20105 0.76 +0.4
4,498,980 - AO356_20105 0.76 -0.6
4,499,011 + AO356_20105 0.77 +0.3
4,499,108 + AO356_20105 0.81 +2.0
4,499,109 - AO356_20105 0.81 +1.0
4,499,109 - AO356_20105 0.81 +0.4
4,499,109 - AO356_20105 0.81 -1.6
4,499,123 + AO356_20105 0.82 -2.1
4,499,123 + AO356_20105 0.82 +0.4
4,499,124 - AO356_20105 0.82 +1.0
4,499,310 + AO356_20105 0.90 -1.6
4,499,310 + AO356_20105 0.90 +1.8
4,499,310 + AO356_20105 0.90 -0.1
4,499,310 + AO356_20105 0.90 +0.4
4,499,311 - AO356_20105 0.90 +1.3
4,499,311 - AO356_20105 0.90 +0.0
4,499,329 + +1.0
4,499,330 - +2.8
4,499,330 - -0.6
4,499,333 + -0.6
4,499,333 + +0.4
4,499,333 + -0.1
4,499,333 + -0.6
4,499,334 - +1.7
4,499,334 - +1.0
4,499,334 - -0.6
4,499,334 - +2.0
4,499,794 + AO356_20110 0.26 +1.3
4,499,795 - AO356_20110 0.26 +0.2
4,499,795 - AO356_20110 0.26 +0.4
4,500,077 - AO356_20110 0.55 +0.4
4,500,077 - AO356_20110 0.55 +0.4
4,500,077 - AO356_20110 0.55 -1.1
4,500,145 + AO356_20110 0.62 +0.4
4,500,145 + AO356_20110 0.62 -0.6
4,500,146 - AO356_20110 0.62 +0.0
4,500,304 + AO356_20110 0.78 -1.6
4,500,365 + AO356_20110 0.84 +1.0
4,500,365 + AO356_20110 0.84 +2.3
4,500,365 + AO356_20110 0.84 +0.2
4,500,366 - AO356_20110 0.84 -0.6
4,500,366 - AO356_20110 0.84 +1.8
4,500,366 - AO356_20110 0.84 +1.0
4,500,366 - AO356_20110 0.84 -1.1
4,500,429 + +0.4
4,500,515 - -0.6
4,500,536 + -0.1
4,500,536 + -0.6
4,500,536 + +0.2
4,500,536 + -0.6
4,500,536 + +0.4
4,500,537 - -1.6

Or see this region's nucleotide sequence