Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19220

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19215 and AO356_19220 are separated by 74 nucleotidesAO356_19220 and AO356_19225 are separated by 146 nucleotides AO356_19215: AO356_19215 - hypothetical protein, at 4,312,740 to 4,313,063 _19215 AO356_19220: AO356_19220 - recombinase RmuC, at 4,313,138 to 4,314,640 _19220 AO356_19225: AO356_19225 - histidine kinase, at 4,314,787 to 4,318,257 _19225 Position (kb) 4313 4314 4315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4312.196 kb on + strandat 4312.197 kb on - strandat 4312.199 kb on + strandat 4312.200 kb on - strandat 4312.215 kb on - strandat 4312.403 kb on + strandat 4312.403 kb on + strandat 4312.404 kb on - strandat 4312.404 kb on - strandat 4312.404 kb on - strandat 4312.404 kb on - strandat 4312.404 kb on - strandat 4312.404 kb on - strandat 4312.405 kb on + strandat 4312.421 kb on + strandat 4312.422 kb on - strandat 4312.422 kb on - strandat 4312.422 kb on - strandat 4312.422 kb on - strandat 4312.482 kb on - strandat 4312.530 kb on + strandat 4312.651 kb on + strandat 4312.652 kb on - strandat 4312.702 kb on + strandat 4312.702 kb on + strandat 4312.702 kb on + strandat 4312.703 kb on - strandat 4312.703 kb on - strandat 4312.703 kb on - strandat 4312.739 kb on + strandat 4312.739 kb on + strandat 4312.757 kb on - strandat 4312.757 kb on - strandat 4312.769 kb on + strandat 4312.769 kb on + strandat 4312.770 kb on - strandat 4312.770 kb on - strandat 4312.770 kb on - strandat 4312.770 kb on - strandat 4312.805 kb on + strand, within AO356_19215at 4312.805 kb on + strand, within AO356_19215at 4312.805 kb on + strand, within AO356_19215at 4312.805 kb on + strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.806 kb on - strand, within AO356_19215at 4312.916 kb on - strand, within AO356_19215at 4313.116 kb on + strandat 4313.117 kb on - strandat 4313.117 kb on - strandat 4313.117 kb on - strandat 4313.117 kb on - strandat 4313.730 kb on - strand, within AO356_19220at 4313.730 kb on - strand, within AO356_19220at 4313.857 kb on + strand, within AO356_19220at 4313.858 kb on - strand, within AO356_19220at 4313.922 kb on - strand, within AO356_19220at 4313.984 kb on + strand, within AO356_19220at 4313.984 kb on + strand, within AO356_19220at 4313.984 kb on + strand, within AO356_19220at 4313.984 kb on + strand, within AO356_19220at 4314.038 kb on + strand, within AO356_19220at 4314.038 kb on + strand, within AO356_19220at 4314.038 kb on + strand, within AO356_19220at 4314.047 kb on + strand, within AO356_19220at 4314.047 kb on + strand, within AO356_19220at 4314.048 kb on - strand, within AO356_19220at 4314.048 kb on - strand, within AO356_19220at 4314.048 kb on - strand, within AO356_19220at 4314.099 kb on + strand, within AO356_19220at 4314.099 kb on + strand, within AO356_19220at 4314.099 kb on + strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.100 kb on - strand, within AO356_19220at 4314.143 kb on + strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.144 kb on - strand, within AO356_19220at 4314.455 kb on + strand, within AO356_19220at 4314.455 kb on + strand, within AO356_19220at 4314.456 kb on - strand, within AO356_19220at 4314.456 kb on - strand, within AO356_19220at 4314.456 kb on - strand, within AO356_19220at 4314.681 kb on + strandat 4314.681 kb on + strandat 4314.681 kb on + strandat 4314.788 kb on + strandat 4314.789 kb on - strandat 4314.789 kb on - strandat 4314.851 kb on + strandat 4314.852 kb on - strandat 4315.093 kb on + strandat 4315.093 kb on + strandat 4315.094 kb on - strandat 4315.094 kb on - strandat 4315.261 kb on + strand, within AO356_19225at 4315.262 kb on - strand, within AO356_19225at 4315.272 kb on + strand, within AO356_19225at 4315.273 kb on - strand, within AO356_19225at 4315.273 kb on - strand, within AO356_19225at 4315.273 kb on - strand, within AO356_19225at 4315.453 kb on + strand, within AO356_19225at 4315.526 kb on - strand, within AO356_19225

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,312,196 + +1.5
4,312,197 - +2.1
4,312,199 + +3.0
4,312,200 - +0.1
4,312,215 - -0.5
4,312,403 + -0.5
4,312,403 + +0.3
4,312,404 - +0.5
4,312,404 - -0.5
4,312,404 - -0.5
4,312,404 - +2.1
4,312,404 - +0.7
4,312,404 - +0.1
4,312,405 + +0.5
4,312,421 + +0.1
4,312,422 - +1.2
4,312,422 - +0.2
4,312,422 - -0.5
4,312,422 - +0.8
4,312,482 - +1.5
4,312,530 + -0.2
4,312,651 + -0.0
4,312,652 - -0.0
4,312,702 + +1.5
4,312,702 + -0.5
4,312,702 + +1.1
4,312,703 - -0.2
4,312,703 - -0.2
4,312,703 - +1.1
4,312,739 + +2.3
4,312,739 + +1.1
4,312,757 - -0.5
4,312,757 - -1.8
4,312,769 + +0.5
4,312,769 + -1.1
4,312,770 - +2.1
4,312,770 - -0.5
4,312,770 - -0.5
4,312,770 - +0.1
4,312,805 + AO356_19215 0.20 -0.5
4,312,805 + AO356_19215 0.20 +1.8
4,312,805 + AO356_19215 0.20 -0.5
4,312,805 + AO356_19215 0.20 +0.1
4,312,806 - AO356_19215 0.20 +1.1
4,312,806 - AO356_19215 0.20 -0.9
4,312,806 - AO356_19215 0.20 -2.3
4,312,806 - AO356_19215 0.20 +1.5
4,312,806 - AO356_19215 0.20 -0.1
4,312,806 - AO356_19215 0.20 +1.1
4,312,806 - AO356_19215 0.20 -0.5
4,312,806 - AO356_19215 0.20 +0.5
4,312,806 - AO356_19215 0.20 +2.1
4,312,806 - AO356_19215 0.20 -0.5
4,312,916 - AO356_19215 0.54 +1.1
4,313,116 + -0.5
4,313,117 - -1.2
4,313,117 - -0.1
4,313,117 - -0.0
4,313,117 - -0.5
4,313,730 - AO356_19220 0.39 +1.1
4,313,730 - AO356_19220 0.39 +0.5
4,313,857 + AO356_19220 0.48 -1.5
4,313,858 - AO356_19220 0.48 -0.5
4,313,922 - AO356_19220 0.52 -2.1
4,313,984 + AO356_19220 0.56 +1.5
4,313,984 + AO356_19220 0.56 +1.3
4,313,984 + AO356_19220 0.56 +0.5
4,313,984 + AO356_19220 0.56 -0.5
4,314,038 + AO356_19220 0.60 +0.1
4,314,038 + AO356_19220 0.60 +0.1
4,314,038 + AO356_19220 0.60 -0.5
4,314,047 + AO356_19220 0.60 +0.1
4,314,047 + AO356_19220 0.60 -0.1
4,314,048 - AO356_19220 0.61 -0.5
4,314,048 - AO356_19220 0.61 +0.5
4,314,048 - AO356_19220 0.61 +1.8
4,314,099 + AO356_19220 0.64 +1.1
4,314,099 + AO356_19220 0.64 -0.5
4,314,099 + AO356_19220 0.64 +1.8
4,314,100 - AO356_19220 0.64 -0.5
4,314,100 - AO356_19220 0.64 +2.1
4,314,100 - AO356_19220 0.64 +0.5
4,314,100 - AO356_19220 0.64 +0.5
4,314,100 - AO356_19220 0.64 +2.3
4,314,100 - AO356_19220 0.64 -0.5
4,314,100 - AO356_19220 0.64 -1.5
4,314,100 - AO356_19220 0.64 +0.5
4,314,100 - AO356_19220 0.64 -0.2
4,314,100 - AO356_19220 0.64 -0.2
4,314,100 - AO356_19220 0.64 +0.2
4,314,100 - AO356_19220 0.64 -0.5
4,314,100 - AO356_19220 0.64 +1.5
4,314,143 + AO356_19220 0.67 +2.1
4,314,144 - AO356_19220 0.67 +0.5
4,314,144 - AO356_19220 0.67 -0.2
4,314,144 - AO356_19220 0.67 -0.5
4,314,144 - AO356_19220 0.67 +1.8
4,314,144 - AO356_19220 0.67 +1.8
4,314,144 - AO356_19220 0.67 -0.5
4,314,144 - AO356_19220 0.67 +1.1
4,314,455 + AO356_19220 0.88 +0.5
4,314,455 + AO356_19220 0.88 -0.5
4,314,456 - AO356_19220 0.88 +1.1
4,314,456 - AO356_19220 0.88 +0.5
4,314,456 - AO356_19220 0.88 -0.5
4,314,681 + +1.5
4,314,681 + +1.7
4,314,681 + +1.5
4,314,788 + -0.5
4,314,789 - +0.5
4,314,789 - -0.1
4,314,851 + -0.8
4,314,852 - -2.8
4,315,093 + -0.5
4,315,093 + -0.5
4,315,094 - -2.1
4,315,094 - -0.5
4,315,261 + AO356_19225 0.14 -0.5
4,315,262 - AO356_19225 0.14 -0.1
4,315,272 + AO356_19225 0.14 +0.1
4,315,273 - AO356_19225 0.14 -0.5
4,315,273 - AO356_19225 0.14 +0.7
4,315,273 - AO356_19225 0.14 +0.5
4,315,453 + AO356_19225 0.19 +0.1
4,315,526 - AO356_19225 0.21 -0.5

Or see this region's nucleotide sequence