Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19035

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19025 and AO356_19030 are separated by 194 nucleotidesAO356_19030 and AO356_19035 overlap by 1 nucleotidesAO356_19035 and AO356_19040 are separated by 196 nucleotides AO356_19025: AO356_19025 - peroxiredoxin, at 4,275,134 to 4,275,601 _19025 AO356_19030: AO356_19030 - hypothetical protein, at 4,275,796 to 4,276,200 _19030 AO356_19035: AO356_19035 - hypothetical protein, at 4,276,200 to 4,276,634 _19035 AO356_19040: AO356_19040 - hydroxyacid dehydrogenase, at 4,276,831 to 4,277,820 _19040 Position (kb) 4276 4277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4275.203 kb on + strand, within AO356_19025at 4275.203 kb on + strand, within AO356_19025at 4275.272 kb on + strand, within AO356_19025at 4275.272 kb on + strand, within AO356_19025at 4275.272 kb on + strand, within AO356_19025at 4275.272 kb on + strand, within AO356_19025at 4275.272 kb on + strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.273 kb on - strand, within AO356_19025at 4275.500 kb on + strand, within AO356_19025at 4275.500 kb on + strand, within AO356_19025at 4275.500 kb on + strand, within AO356_19025at 4275.500 kb on + strand, within AO356_19025at 4275.500 kb on + strand, within AO356_19025at 4275.500 kb on + strand, within AO356_19025at 4275.501 kb on - strand, within AO356_19025at 4275.501 kb on - strand, within AO356_19025at 4275.501 kb on - strand, within AO356_19025at 4275.501 kb on - strand, within AO356_19025at 4275.501 kb on - strand, within AO356_19025at 4275.501 kb on - strand, within AO356_19025at 4275.564 kb on + strandat 4275.565 kb on - strandat 4275.565 kb on - strandat 4275.565 kb on - strandat 4275.995 kb on + strand, within AO356_19030at 4275.995 kb on + strand, within AO356_19030at 4275.996 kb on - strand, within AO356_19030at 4276.032 kb on - strand, within AO356_19030at 4276.073 kb on + strand, within AO356_19030at 4276.074 kb on - strand, within AO356_19030at 4276.074 kb on - strand, within AO356_19030at 4276.074 kb on - strand, within AO356_19030at 4276.111 kb on - strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.112 kb on + strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.113 kb on - strand, within AO356_19030at 4276.373 kb on + strand, within AO356_19035at 4276.373 kb on + strand, within AO356_19035at 4276.374 kb on - strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.509 kb on + strand, within AO356_19035at 4276.510 kb on - strand, within AO356_19035at 4276.510 kb on - strand, within AO356_19035at 4276.510 kb on - strand, within AO356_19035at 4276.510 kb on - strand, within AO356_19035at 4276.510 kb on - strand, within AO356_19035at 4276.647 kb on + strandat 4276.648 kb on - strandat 4276.661 kb on + strandat 4276.661 kb on + strandat 4276.661 kb on + strandat 4276.662 kb on - strandat 4276.662 kb on - strandat 4276.662 kb on - strandat 4276.662 kb on - strandat 4276.762 kb on + strandat 4276.762 kb on + strandat 4276.762 kb on + strandat 4276.763 kb on - strandat 4276.881 kb on + strandat 4276.881 kb on + strandat 4277.042 kb on + strand, within AO356_19040at 4277.060 kb on + strand, within AO356_19040at 4277.061 kb on - strand, within AO356_19040at 4277.104 kb on - strand, within AO356_19040at 4277.104 kb on - strand, within AO356_19040at 4277.104 kb on - strand, within AO356_19040at 4277.104 kb on - strand, within AO356_19040at 4277.259 kb on - strand, within AO356_19040at 4277.295 kb on - strand, within AO356_19040at 4277.450 kb on + strand, within AO356_19040at 4277.451 kb on - strand, within AO356_19040at 4277.472 kb on + strand, within AO356_19040at 4277.472 kb on + strand, within AO356_19040at 4277.473 kb on - strand, within AO356_19040at 4277.473 kb on - strand, within AO356_19040at 4277.473 kb on - strand, within AO356_19040at 4277.522 kb on + strand, within AO356_19040at 4277.523 kb on - strand, within AO356_19040at 4277.523 kb on - strand, within AO356_19040

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,275,203 + AO356_19025 0.15 -0.6
4,275,203 + AO356_19025 0.15 +0.6
4,275,272 + AO356_19025 0.29 +0.6
4,275,272 + AO356_19025 0.29 +1.1
4,275,272 + AO356_19025 0.29 -0.4
4,275,272 + AO356_19025 0.29 +0.1
4,275,272 + AO356_19025 0.29 +2.1
4,275,273 - AO356_19025 0.30 +0.1
4,275,273 - AO356_19025 0.30 -1.4
4,275,273 - AO356_19025 0.30 -1.4
4,275,273 - AO356_19025 0.30 +2.1
4,275,273 - AO356_19025 0.30 -0.4
4,275,273 - AO356_19025 0.30 -0.0
4,275,273 - AO356_19025 0.30 +1.1
4,275,500 + AO356_19025 0.78 -0.9
4,275,500 + AO356_19025 0.78 +1.0
4,275,500 + AO356_19025 0.78 +0.9
4,275,500 + AO356_19025 0.78 -1.4
4,275,500 + AO356_19025 0.78 +0.1
4,275,500 + AO356_19025 0.78 +2.1
4,275,501 - AO356_19025 0.78 -0.6
4,275,501 - AO356_19025 0.78 +0.3
4,275,501 - AO356_19025 0.78 -0.2
4,275,501 - AO356_19025 0.78 +0.6
4,275,501 - AO356_19025 0.78 +1.8
4,275,501 - AO356_19025 0.78 +0.7
4,275,564 + -0.2
4,275,565 - +0.4
4,275,565 - -2.8
4,275,565 - -0.9
4,275,995 + AO356_19030 0.49 +1.1
4,275,995 + AO356_19030 0.49 -0.9
4,275,996 - AO356_19030 0.49 -1.0
4,276,032 - AO356_19030 0.58 +0.6
4,276,073 + AO356_19030 0.68 +1.1
4,276,074 - AO356_19030 0.69 -0.4
4,276,074 - AO356_19030 0.69 +1.6
4,276,074 - AO356_19030 0.69 -0.4
4,276,111 - AO356_19030 0.78 -2.0
4,276,112 + AO356_19030 0.78 +0.1
4,276,112 + AO356_19030 0.78 -1.4
4,276,112 + AO356_19030 0.78 -1.4
4,276,112 + AO356_19030 0.78 +0.6
4,276,112 + AO356_19030 0.78 +1.1
4,276,112 + AO356_19030 0.78 -0.4
4,276,112 + AO356_19030 0.78 -0.4
4,276,112 + AO356_19030 0.78 -1.0
4,276,112 + AO356_19030 0.78 +0.6
4,276,112 + AO356_19030 0.78 +0.4
4,276,112 + AO356_19030 0.78 -1.0
4,276,112 + AO356_19030 0.78 +1.1
4,276,113 - AO356_19030 0.78 +0.6
4,276,113 - AO356_19030 0.78 -0.1
4,276,113 - AO356_19030 0.78 +0.8
4,276,113 - AO356_19030 0.78 +0.6
4,276,113 - AO356_19030 0.78 +0.3
4,276,113 - AO356_19030 0.78 +0.3
4,276,113 - AO356_19030 0.78 +0.2
4,276,113 - AO356_19030 0.78 +1.2
4,276,113 - AO356_19030 0.78 -0.1
4,276,113 - AO356_19030 0.78 +0.9
4,276,113 - AO356_19030 0.78 +1.7
4,276,113 - AO356_19030 0.78 +1.6
4,276,373 + AO356_19035 0.40 +0.6
4,276,373 + AO356_19035 0.40 +1.7
4,276,374 - AO356_19035 0.40 -1.9
4,276,509 + AO356_19035 0.71 +0.6
4,276,509 + AO356_19035 0.71 +0.9
4,276,509 + AO356_19035 0.71 +1.9
4,276,509 + AO356_19035 0.71 +1.0
4,276,509 + AO356_19035 0.71 -2.4
4,276,509 + AO356_19035 0.71 +1.1
4,276,509 + AO356_19035 0.71 +0.6
4,276,509 + AO356_19035 0.71 +1.6
4,276,509 + AO356_19035 0.71 -2.0
4,276,509 + AO356_19035 0.71 +0.6
4,276,510 - AO356_19035 0.71 +1.6
4,276,510 - AO356_19035 0.71 -1.0
4,276,510 - AO356_19035 0.71 -2.4
4,276,510 - AO356_19035 0.71 +2.4
4,276,510 - AO356_19035 0.71 +1.1
4,276,647 + +0.0
4,276,648 - +0.1
4,276,661 + +1.0
4,276,661 + -0.4
4,276,661 + +0.8
4,276,662 - +0.6
4,276,662 - +0.1
4,276,662 - +0.6
4,276,662 - -0.7
4,276,762 + +2.7
4,276,762 + +1.1
4,276,762 + +0.6
4,276,763 - -0.1
4,276,881 + +1.1
4,276,881 + +0.8
4,277,042 + AO356_19040 0.21 -2.0
4,277,060 + AO356_19040 0.23 +1.1
4,277,061 - AO356_19040 0.23 +3.0
4,277,104 - AO356_19040 0.28 +0.2
4,277,104 - AO356_19040 0.28 +0.3
4,277,104 - AO356_19040 0.28 -0.4
4,277,104 - AO356_19040 0.28 +1.6
4,277,259 - AO356_19040 0.43 +0.6
4,277,295 - AO356_19040 0.47 +0.8
4,277,450 + AO356_19040 0.63 -1.4
4,277,451 - AO356_19040 0.63 +0.1
4,277,472 + AO356_19040 0.65 +1.1
4,277,472 + AO356_19040 0.65 +0.9
4,277,473 - AO356_19040 0.65 -0.0
4,277,473 - AO356_19040 0.65 +0.5
4,277,473 - AO356_19040 0.65 +0.4
4,277,522 + AO356_19040 0.70 +1.9
4,277,523 - AO356_19040 0.70 +1.0
4,277,523 - AO356_19040 0.70 -0.7

Or see this region's nucleotide sequence