Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18955

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18950 and AO356_18955 are separated by 170 nucleotidesAO356_18955 and AO356_18960 are separated by 144 nucleotidesAO356_18960 and AO356_18965 are separated by 105 nucleotides AO356_18950: AO356_18950 - 4'-phosphopantetheinyl transferase, at 4,261,436 to 4,262,170 _18950 AO356_18955: AO356_18955 - dienelactone hydrolase, at 4,262,341 to 4,263,132 _18955 AO356_18960: AO356_18960 - hypothetical protein, at 4,263,277 to 4,263,876 _18960 AO356_18965: AO356_18965 - transcriptional regulator, at 4,263,982 to 4,264,659 _18965 Position (kb) 4262 4263 4264Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4262.335 kb on + strandat 4262.408 kb on + strandat 4262.408 kb on + strandat 4262.408 kb on + strandat 4262.408 kb on + strandat 4262.409 kb on - strandat 4262.409 kb on - strandat 4262.502 kb on + strand, within AO356_18955at 4262.503 kb on - strand, within AO356_18955at 4262.503 kb on - strand, within AO356_18955at 4262.503 kb on - strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.593 kb on + strand, within AO356_18955at 4262.594 kb on - strand, within AO356_18955at 4262.594 kb on - strand, within AO356_18955at 4262.594 kb on - strand, within AO356_18955at 4262.675 kb on - strand, within AO356_18955at 4262.879 kb on + strand, within AO356_18955at 4262.879 kb on + strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.880 kb on - strand, within AO356_18955at 4262.904 kb on - strand, within AO356_18955at 4262.942 kb on + strand, within AO356_18955at 4263.011 kb on + strand, within AO356_18955at 4263.011 kb on + strand, within AO356_18955at 4263.012 kb on - strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.017 kb on + strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.018 kb on - strand, within AO356_18955at 4263.021 kb on - strand, within AO356_18955at 4263.053 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.109 kb on + strandat 4263.110 kb on - strandat 4263.110 kb on - strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.145 kb on + strandat 4263.167 kb on + strandat 4263.463 kb on + strand, within AO356_18960at 4263.463 kb on + strand, within AO356_18960at 4263.463 kb on + strand, within AO356_18960at 4263.464 kb on - strand, within AO356_18960at 4263.464 kb on - strand, within AO356_18960at 4263.464 kb on - strand, within AO356_18960at 4263.505 kb on + strand, within AO356_18960at 4263.505 kb on + strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.506 kb on - strand, within AO356_18960at 4263.514 kb on + strand, within AO356_18960at 4263.514 kb on + strand, within AO356_18960at 4263.514 kb on + strand, within AO356_18960at 4263.515 kb on - strand, within AO356_18960at 4263.577 kb on + strand, within AO356_18960at 4263.577 kb on + strand, within AO356_18960at 4263.578 kb on - strand, within AO356_18960at 4263.784 kb on - strand, within AO356_18960at 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.850 kb on + strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.851 kb on - strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.865 kb on + strandat 4263.866 kb on - strandat 4263.866 kb on - strandat 4263.866 kb on - strandat 4263.874 kb on + strandat 4263.875 kb on - strandat 4263.894 kb on + strandat 4264.093 kb on + strand, within AO356_18965at 4264.094 kb on - strand, within AO356_18965

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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4,262,335 + +0.6
4,262,408 + -0.4
4,262,408 + +0.0
4,262,408 + +1.2
4,262,408 + +1.2
4,262,409 - +1.2
4,262,409 - -1.4
4,262,502 + AO356_18955 0.20 +0.6
4,262,503 - AO356_18955 0.20 -0.4
4,262,503 - AO356_18955 0.20 +0.3
4,262,503 - AO356_18955 0.20 +0.6
4,262,593 + AO356_18955 0.32 +0.6
4,262,593 + AO356_18955 0.32 +1.2
4,262,593 + AO356_18955 0.32 -1.0
4,262,593 + AO356_18955 0.32 +0.4
4,262,594 - AO356_18955 0.32 -0.4
4,262,594 - AO356_18955 0.32 +0.6
4,262,594 - AO356_18955 0.32 -2.0
4,262,675 - AO356_18955 0.42 +0.2
4,262,879 + AO356_18955 0.68 -0.4
4,262,879 + AO356_18955 0.68 +0.6
4,262,880 - AO356_18955 0.68 -0.4
4,262,880 - AO356_18955 0.68 +1.4
4,262,880 - AO356_18955 0.68 -0.4
4,262,880 - AO356_18955 0.68 -0.4
4,262,904 - AO356_18955 0.71 +0.3
4,262,942 + AO356_18955 0.76 +0.3
4,263,011 + AO356_18955 0.85 +1.2
4,263,011 + AO356_18955 0.85 +2.1
4,263,012 - AO356_18955 0.85 -0.4
4,263,017 + AO356_18955 0.85 +1.4
4,263,017 + AO356_18955 0.85 -0.4
4,263,017 + AO356_18955 0.85 +2.0
4,263,017 + AO356_18955 0.85 +0.6
4,263,017 + AO356_18955 0.85 +1.6
4,263,018 - AO356_18955 0.85 +2.2
4,263,018 - AO356_18955 0.85 +1.9
4,263,018 - AO356_18955 0.85 +1.2
4,263,018 - AO356_18955 0.85 +0.4
4,263,018 - AO356_18955 0.85 +1.9
4,263,018 - AO356_18955 0.85 -0.1
4,263,018 - AO356_18955 0.85 +0.6
4,263,018 - AO356_18955 0.85 +1.2
4,263,018 - AO356_18955 0.85 +2.4
4,263,018 - AO356_18955 0.85 +0.6
4,263,021 - AO356_18955 0.86 -0.4
4,263,053 + -0.4
4,263,109 + +0.0
4,263,109 + -0.4
4,263,109 + +0.8
4,263,109 + +0.6
4,263,109 + +1.0
4,263,109 + -0.4
4,263,109 + +0.6
4,263,109 + +1.4
4,263,109 + -0.6
4,263,109 + -0.7
4,263,110 - +2.2
4,263,110 - +1.2
4,263,145 + -2.4
4,263,145 + +1.9
4,263,145 + -0.4
4,263,145 + +2.6
4,263,167 + +0.0
4,263,463 + AO356_18960 0.31 +0.0
4,263,463 + AO356_18960 0.31 -1.0
4,263,463 + AO356_18960 0.31 +0.6
4,263,464 - AO356_18960 0.31 +0.2
4,263,464 - AO356_18960 0.31 -2.0
4,263,464 - AO356_18960 0.31 -1.1
4,263,505 + AO356_18960 0.38 +0.9
4,263,505 + AO356_18960 0.38 +0.6
4,263,506 - AO356_18960 0.38 +0.2
4,263,506 - AO356_18960 0.38 -0.4
4,263,506 - AO356_18960 0.38 +0.6
4,263,506 - AO356_18960 0.38 +1.2
4,263,514 + AO356_18960 0.40 +2.2
4,263,514 + AO356_18960 0.40 +0.8
4,263,514 + AO356_18960 0.40 -1.4
4,263,515 - AO356_18960 0.40 +2.8
4,263,577 + AO356_18960 0.50 -1.4
4,263,577 + AO356_18960 0.50 -0.4
4,263,578 - AO356_18960 0.50 +1.2
4,263,784 - AO356_18960 0.84 +0.6
4,263,850 + +1.9
4,263,850 + +1.9
4,263,850 + +0.9
4,263,850 + -0.4
4,263,851 - +1.9
4,263,851 - +0.6
4,263,851 - -1.0
4,263,851 - +0.7
4,263,851 - -1.4
4,263,865 + +1.2
4,263,865 + -0.4
4,263,865 + +0.0
4,263,865 + +0.6
4,263,865 + -3.6
4,263,866 - +0.2
4,263,866 - +0.2
4,263,866 - +1.2
4,263,874 + +1.2
4,263,875 - -0.4
4,263,894 + +2.8
4,264,093 + AO356_18965 0.16 -0.4
4,264,094 - AO356_18965 0.17 +1.4

Or see this region's nucleotide sequence