Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17705

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17700 and AO356_17705 are separated by 42 nucleotidesAO356_17705 and AO356_17710 overlap by 4 nucleotides AO356_17695: AO356_17695 - histidine kinase, at 3,990,418 to 3,992,220 _17695 AO356_17700: AO356_17700 - cytochrome B6, at 3,992,217 to 3,993,176 _17700 AO356_17705: AO356_17705 - diguanylate cyclase, at 3,993,219 to 3,995,093 _17705 AO356_17710: AO356_17710 - diguanylate cyclase, at 3,995,090 to 3,997,381 _17710 Position (kb) 3993 3994 3995 3996Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3992.279 kb on + strandat 3992.280 kb on - strandat 3992.280 kb on - strandat 3992.280 kb on - strandat 3992.280 kb on - strandat 3992.311 kb on + strandat 3992.311 kb on + strandat 3992.311 kb on + strandat 3992.311 kb on + strandat 3992.311 kb on + strandat 3992.312 kb on - strandat 3992.369 kb on - strand, within AO356_17700at 3992.404 kb on - strand, within AO356_17700at 3992.491 kb on + strand, within AO356_17700at 3992.491 kb on + strand, within AO356_17700at 3992.491 kb on + strand, within AO356_17700at 3992.492 kb on - strand, within AO356_17700at 3992.492 kb on - strand, within AO356_17700at 3992.492 kb on - strand, within AO356_17700at 3992.492 kb on - strand, within AO356_17700at 3992.492 kb on - strand, within AO356_17700at 3992.492 kb on - strand, within AO356_17700at 3992.567 kb on - strand, within AO356_17700at 3992.632 kb on + strand, within AO356_17700at 3992.674 kb on + strand, within AO356_17700at 3992.674 kb on + strand, within AO356_17700at 3992.722 kb on + strand, within AO356_17700at 3992.722 kb on + strand, within AO356_17700at 3992.722 kb on + strand, within AO356_17700at 3992.722 kb on + strand, within AO356_17700at 3992.722 kb on + strand, within AO356_17700at 3992.723 kb on - strand, within AO356_17700at 3992.723 kb on - strand, within AO356_17700at 3992.843 kb on + strand, within AO356_17700at 3992.897 kb on + strand, within AO356_17700at 3992.898 kb on - strand, within AO356_17700at 3992.904 kb on - strand, within AO356_17700at 3992.904 kb on - strand, within AO356_17700at 3993.124 kb on - strandat 3993.124 kb on - strandat 3993.168 kb on + strandat 3993.168 kb on + strandat 3993.168 kb on + strandat 3993.168 kb on + strandat 3993.168 kb on + strandat 3993.169 kb on - strandat 3993.169 kb on - strandat 3993.169 kb on - strandat 3993.169 kb on - strandat 3993.298 kb on + strandat 3993.298 kb on + strandat 3993.298 kb on + strandat 3993.298 kb on + strandat 3993.298 kb on + strandat 3993.298 kb on + strandat 3993.299 kb on - strandat 3993.299 kb on - strandat 3993.299 kb on - strandat 3993.299 kb on - strandat 3993.299 kb on - strandat 3993.299 kb on - strandat 3993.299 kb on - strandat 3993.301 kb on + strandat 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.505 kb on + strand, within AO356_17705at 3993.506 kb on - strand, within AO356_17705at 3993.506 kb on - strand, within AO356_17705at 3993.506 kb on - strand, within AO356_17705at 3993.553 kb on - strand, within AO356_17705at 3993.576 kb on + strand, within AO356_17705at 3993.576 kb on + strand, within AO356_17705at 3993.577 kb on - strand, within AO356_17705at 3993.577 kb on - strand, within AO356_17705at 3993.577 kb on - strand, within AO356_17705at 3993.594 kb on - strand, within AO356_17705at 3993.612 kb on + strand, within AO356_17705at 3993.612 kb on + strand, within AO356_17705at 3993.636 kb on + strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.637 kb on - strand, within AO356_17705at 3993.891 kb on + strand, within AO356_17705at 3993.892 kb on - strand, within AO356_17705at 3993.946 kb on + strand, within AO356_17705at 3993.946 kb on + strand, within AO356_17705at 3994.048 kb on + strand, within AO356_17705at 3994.049 kb on - strand, within AO356_17705at 3994.509 kb on + strand, within AO356_17705at 3994.510 kb on - strand, within AO356_17705at 3994.510 kb on - strand, within AO356_17705at 3994.510 kb on - strand, within AO356_17705at 3994.516 kb on + strand, within AO356_17705at 3994.516 kb on + strand, within AO356_17705at 3994.516 kb on + strand, within AO356_17705at 3994.517 kb on - strand, within AO356_17705at 3994.517 kb on - strand, within AO356_17705at 3994.517 kb on - strand, within AO356_17705at 3994.517 kb on - strand, within AO356_17705at 3994.659 kb on - strand, within AO356_17705at 3994.729 kb on + strand, within AO356_17705at 3994.730 kb on - strand, within AO356_17705at 3994.906 kb on + strandat 3994.907 kb on - strandat 3995.208 kb on + strandat 3995.208 kb on + strandat 3995.208 kb on + strandat 3995.208 kb on + strandat 3995.208 kb on + strandat 3995.209 kb on - strandat 3995.209 kb on - strandat 3995.406 kb on + strand, within AO356_17710at 3995.406 kb on + strand, within AO356_17710at 3995.419 kb on - strand, within AO356_17710at 3995.419 kb on - strand, within AO356_17710at 3995.419 kb on - strand, within AO356_17710at 3995.433 kb on + strand, within AO356_17710at 3995.433 kb on + strand, within AO356_17710at 3995.433 kb on + strand, within AO356_17710at 3995.434 kb on - strand, within AO356_17710at 3995.598 kb on + strand, within AO356_17710at 3995.598 kb on + strand, within AO356_17710at 3995.598 kb on + strand, within AO356_17710at 3995.599 kb on - strand, within AO356_17710at 3995.711 kb on + strand, within AO356_17710at 3995.862 kb on + strand, within AO356_17710at 3995.862 kb on + strand, within AO356_17710at 3995.862 kb on + strand, within AO356_17710at 3995.863 kb on - strand, within AO356_17710at 3995.863 kb on - strand, within AO356_17710at 3995.863 kb on - strand, within AO356_17710at 3995.863 kb on - strand, within AO356_17710at 3995.941 kb on + strand, within AO356_17710at 3995.964 kb on + strand, within AO356_17710at 3995.964 kb on + strand, within AO356_17710at 3995.964 kb on + strand, within AO356_17710at 3996.051 kb on + strand, within AO356_17710at 3996.051 kb on + strand, within AO356_17710at 3996.051 kb on + strand, within AO356_17710at 3996.052 kb on - strand, within AO356_17710

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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3,992,279 + +1.1
3,992,280 - +0.5
3,992,280 - -0.4
3,992,280 - -1.2
3,992,280 - -0.4
3,992,311 + -2.4
3,992,311 + +1.0
3,992,311 + +1.6
3,992,311 + -2.4
3,992,311 + -0.8
3,992,312 - +0.1
3,992,369 - AO356_17700 0.16 +1.2
3,992,404 - AO356_17700 0.19 +0.8
3,992,491 + AO356_17700 0.29 +2.2
3,992,491 + AO356_17700 0.29 -1.0
3,992,491 + AO356_17700 0.29 -0.4
3,992,492 - AO356_17700 0.29 +0.8
3,992,492 - AO356_17700 0.29 +0.8
3,992,492 - AO356_17700 0.29 -0.9
3,992,492 - AO356_17700 0.29 +0.6
3,992,492 - AO356_17700 0.29 +2.1
3,992,492 - AO356_17700 0.29 +0.4
3,992,567 - AO356_17700 0.36 -0.4
3,992,632 + AO356_17700 0.43 +1.0
3,992,674 + AO356_17700 0.48 +0.4
3,992,674 + AO356_17700 0.48 +0.8
3,992,722 + AO356_17700 0.53 -0.4
3,992,722 + AO356_17700 0.53 +0.6
3,992,722 + AO356_17700 0.53 +0.6
3,992,722 + AO356_17700 0.53 +1.1
3,992,722 + AO356_17700 0.53 -0.1
3,992,723 - AO356_17700 0.53 +0.6
3,992,723 - AO356_17700 0.53 +2.0
3,992,843 + AO356_17700 0.65 -0.4
3,992,897 + AO356_17700 0.71 -0.4
3,992,898 - AO356_17700 0.71 -0.0
3,992,904 - AO356_17700 0.72 +0.2
3,992,904 - AO356_17700 0.72 +1.2
3,993,124 - +0.6
3,993,124 - -0.0
3,993,168 + -0.4
3,993,168 + -0.0
3,993,168 + -0.1
3,993,168 + +0.5
3,993,168 + +1.0
3,993,169 - -0.0
3,993,169 - +0.4
3,993,169 - +0.7
3,993,169 - -0.4
3,993,298 + -0.4
3,993,298 + -0.7
3,993,298 + +0.4
3,993,298 + +0.2
3,993,298 + +0.5
3,993,298 + -0.4
3,993,299 - +0.1
3,993,299 - +0.2
3,993,299 - +1.0
3,993,299 - +0.6
3,993,299 - +0.4
3,993,299 - +2.0
3,993,299 - +0.8
3,993,301 + -0.4
3,993,505 + AO356_17705 0.15 -0.4
3,993,505 + AO356_17705 0.15 -0.2
3,993,505 + AO356_17705 0.15 +1.5
3,993,505 + AO356_17705 0.15 +2.2
3,993,505 + AO356_17705 0.15 +0.6
3,993,505 + AO356_17705 0.15 +1.0
3,993,505 + AO356_17705 0.15 +1.2
3,993,505 + AO356_17705 0.15 -0.6
3,993,505 + AO356_17705 0.15 +2.0
3,993,506 - AO356_17705 0.15 +0.8
3,993,506 - AO356_17705 0.15 +1.2
3,993,506 - AO356_17705 0.15 -0.4
3,993,553 - AO356_17705 0.18 +1.8
3,993,576 + AO356_17705 0.19 +1.2
3,993,576 + AO356_17705 0.19 +0.5
3,993,577 - AO356_17705 0.19 +0.5
3,993,577 - AO356_17705 0.19 -1.2
3,993,577 - AO356_17705 0.19 +0.6
3,993,594 - AO356_17705 0.20 +0.1
3,993,612 + AO356_17705 0.21 +1.0
3,993,612 + AO356_17705 0.21 +0.8
3,993,636 + AO356_17705 0.22 +1.5
3,993,637 - AO356_17705 0.22 +0.2
3,993,637 - AO356_17705 0.22 +3.0
3,993,637 - AO356_17705 0.22 +0.5
3,993,637 - AO356_17705 0.22 +0.1
3,993,637 - AO356_17705 0.22 +0.5
3,993,637 - AO356_17705 0.22 +1.2
3,993,637 - AO356_17705 0.22 +0.1
3,993,891 + AO356_17705 0.36 +0.5
3,993,892 - AO356_17705 0.36 -0.5
3,993,946 + AO356_17705 0.39 -0.4
3,993,946 + AO356_17705 0.39 +0.3
3,994,048 + AO356_17705 0.44 +1.6
3,994,049 - AO356_17705 0.44 +0.3
3,994,509 + AO356_17705 0.69 +0.5
3,994,510 - AO356_17705 0.69 -0.1
3,994,510 - AO356_17705 0.69 +0.4
3,994,510 - AO356_17705 0.69 +0.6
3,994,516 + AO356_17705 0.69 +0.2
3,994,516 + AO356_17705 0.69 +1.6
3,994,516 + AO356_17705 0.69 +1.0
3,994,517 - AO356_17705 0.69 +0.5
3,994,517 - AO356_17705 0.69 +1.5
3,994,517 - AO356_17705 0.69 +0.1
3,994,517 - AO356_17705 0.69 -0.4
3,994,659 - AO356_17705 0.77 -1.9
3,994,729 + AO356_17705 0.81 +0.8
3,994,730 - AO356_17705 0.81 +0.5
3,994,906 + +1.1
3,994,907 - -0.7
3,995,208 + +0.7
3,995,208 + -0.4
3,995,208 + -0.4
3,995,208 + +1.2
3,995,208 + -1.9
3,995,209 - +1.5
3,995,209 - +2.0
3,995,406 + AO356_17710 0.14 +2.6
3,995,406 + AO356_17710 0.14 +0.6
3,995,419 - AO356_17710 0.14 +0.8
3,995,419 - AO356_17710 0.14 -0.5
3,995,419 - AO356_17710 0.14 -0.7
3,995,433 + AO356_17710 0.15 +2.2
3,995,433 + AO356_17710 0.15 +2.0
3,995,433 + AO356_17710 0.15 -0.1
3,995,434 - AO356_17710 0.15 -0.7
3,995,598 + AO356_17710 0.22 +2.5
3,995,598 + AO356_17710 0.22 +1.1
3,995,598 + AO356_17710 0.22 +0.2
3,995,599 - AO356_17710 0.22 -0.4
3,995,711 + AO356_17710 0.27 +0.2
3,995,862 + AO356_17710 0.34 +0.1
3,995,862 + AO356_17710 0.34 -1.0
3,995,862 + AO356_17710 0.34 +1.9
3,995,863 - AO356_17710 0.34 +1.0
3,995,863 - AO356_17710 0.34 +0.8
3,995,863 - AO356_17710 0.34 +0.9
3,995,863 - AO356_17710 0.34 +0.9
3,995,941 + AO356_17710 0.37 +0.1
3,995,964 + AO356_17710 0.38 +0.2
3,995,964 + AO356_17710 0.38 +1.5
3,995,964 + AO356_17710 0.38 +0.2
3,996,051 + AO356_17710 0.42 +0.6
3,996,051 + AO356_17710 0.42 +0.1
3,996,051 + AO356_17710 0.42 -0.9
3,996,052 - AO356_17710 0.42 -1.4

Or see this region's nucleotide sequence