Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_08910 and AO356_08915 are separated by 616 nucleotides AO356_08915 and AO356_08920 are separated by 159 nucleotides
AO356_08910: AO356_08910 - carbamoyltransferase, at 2,008,295 to 2,010,052
_08910
AO356_08915: AO356_08915 - hypothetical protein, at 2,010,669 to 2,011,055
_08915
AO356_08920: AO356_08920 - serine/threonine protein kinase, at 2,011,215 to 2,012,660
_08920
Position (kb)
2010
2011
2012 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2009.939 kb on - strand at 2009.992 kb on - strand at 2009.992 kb on - strand at 2009.992 kb on - strand at 2010.068 kb on - strand at 2010.068 kb on - strand at 2010.068 kb on - strand at 2010.068 kb on - strand at 2010.068 kb on - strand at 2010.150 kb on - strand at 2010.152 kb on - strand at 2010.152 kb on - strand at 2010.152 kb on - strand at 2010.206 kb on + strand at 2010.207 kb on - strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.213 kb on + strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.214 kb on - strand at 2010.217 kb on + strand at 2010.217 kb on + strand at 2010.217 kb on + strand at 2010.217 kb on + strand at 2010.217 kb on + strand at 2010.217 kb on + strand at 2010.217 kb on + strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.218 kb on - strand at 2010.324 kb on + strand at 2010.401 kb on + strand at 2010.401 kb on + strand at 2010.401 kb on + strand at 2010.401 kb on + strand at 2010.403 kb on + strand at 2010.404 kb on - strand at 2010.404 kb on - strand at 2010.451 kb on - strand at 2010.484 kb on + strand at 2010.490 kb on - strand at 2010.490 kb on - strand at 2010.534 kb on - strand at 2010.642 kb on + strand at 2010.642 kb on + strand at 2010.678 kb on + strand at 2010.678 kb on + strand at 2010.679 kb on - strand at 2010.679 kb on - strand at 2010.679 kb on - strand at 2010.720 kb on + strand, within AO356_08915 at 2010.720 kb on + strand, within AO356_08915 at 2010.788 kb on - strand, within AO356_08915 at 2010.812 kb on + strand, within AO356_08915 at 2010.832 kb on + strand, within AO356_08915 at 2010.832 kb on + strand, within AO356_08915 at 2010.832 kb on + strand, within AO356_08915 at 2010.832 kb on + strand, within AO356_08915 at 2010.833 kb on - strand, within AO356_08915 at 2010.833 kb on - strand, within AO356_08915 at 2010.833 kb on - strand, within AO356_08915 at 2010.871 kb on + strand, within AO356_08915 at 2010.907 kb on + strand, within AO356_08915 at 2010.913 kb on + strand, within AO356_08915 at 2010.914 kb on - strand, within AO356_08915 at 2010.925 kb on - strand, within AO356_08915 at 2010.925 kb on - strand, within AO356_08915 at 2010.927 kb on + strand, within AO356_08915 at 2010.948 kb on - strand, within AO356_08915 at 2011.029 kb on + strand at 2011.032 kb on + strand at 2011.032 kb on + strand at 2011.033 kb on - strand at 2011.040 kb on + strand at 2011.041 kb on - strand at 2011.041 kb on - strand at 2011.045 kb on + strand at 2011.045 kb on + strand at 2011.092 kb on + strand at 2011.092 kb on + strand at 2011.092 kb on + strand at 2011.093 kb on - strand at 2011.093 kb on - strand at 2011.093 kb on - strand at 2011.093 kb on - strand at 2011.094 kb on + strand at 2011.178 kb on + strand at 2011.179 kb on - strand at 2011.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 2,009,939 - +1.4 2,009,992 - -1.2 2,009,992 - +1.8 2,009,992 - -0.2 2,010,068 - -1.5 2,010,068 - -0.2 2,010,068 - +1.4 2,010,068 - -2.5 2,010,068 - -0.2 2,010,150 - -0.2 2,010,152 - +0.6 2,010,152 - -0.2 2,010,152 - +0.8 2,010,206 + +0.6 2,010,207 - +1.5 2,010,213 + -0.6 2,010,213 + +1.6 2,010,213 + +0.4 2,010,213 + -0.6 2,010,213 + +1.6 2,010,213 + -1.0 2,010,213 + +0.3 2,010,213 + -0.4 2,010,213 + -2.5 2,010,213 + +1.4 2,010,213 + +1.1 2,010,213 + -0.4 2,010,213 + -1.2 2,010,213 + +0.6 2,010,213 + +0.8 2,010,213 + -0.2 2,010,213 + -0.8 2,010,213 + +2.7 2,010,214 - +0.1 2,010,214 - -0.6 2,010,214 - -0.8 2,010,214 - +1.7 2,010,214 - -0.2 2,010,214 - -0.2 2,010,214 - +1.2 2,010,214 - +1.4 2,010,214 - +1.6 2,010,214 - +0.8 2,010,214 - +1.4 2,010,214 - -0.5 2,010,217 + +0.8 2,010,217 + +0.9 2,010,217 + +1.8 2,010,217 + -1.2 2,010,217 + -0.8 2,010,217 + +0.4 2,010,217 + -0.8 2,010,218 - +1.0 2,010,218 - -0.2 2,010,218 - -0.7 2,010,218 - -1.2 2,010,218 - -0.2 2,010,218 - +1.3 2,010,218 - -0.5 2,010,218 - +0.6 2,010,218 - +0.7 2,010,218 - +1.4 2,010,218 - -0.7 2,010,218 - +0.6 2,010,218 - -0.2 2,010,218 - +1.2 2,010,218 - +0.8 2,010,218 - +2.1 2,010,324 + +0.8 2,010,401 + +0.7 2,010,401 + +0.4 2,010,401 + +1.3 2,010,401 + +1.4 2,010,403 + +0.1 2,010,404 - +1.8 2,010,404 - +0.8 2,010,451 - -0.2 2,010,484 + -0.2 2,010,490 - -0.2 2,010,490 - -0.2 2,010,534 - -0.6 2,010,642 + +1.6 2,010,642 + -0.8 2,010,678 + +0.1 2,010,678 + -2.0 2,010,679 - +0.6 2,010,679 - +1.2 2,010,679 - -0.5 2,010,720 + AO356_08915 0.13 -0.2 2,010,720 + AO356_08915 0.13 +0.2 2,010,788 - AO356_08915 0.31 +1.8 2,010,812 + AO356_08915 0.37 +0.0 2,010,832 + AO356_08915 0.42 +2.3 2,010,832 + AO356_08915 0.42 +0.8 2,010,832 + AO356_08915 0.42 -0.2 2,010,832 + AO356_08915 0.42 +0.2 2,010,833 - AO356_08915 0.42 -1.0 2,010,833 - AO356_08915 0.42 -0.2 2,010,833 - AO356_08915 0.42 -0.9 2,010,871 + AO356_08915 0.52 -2.8 2,010,907 + AO356_08915 0.61 -1.2 2,010,913 + AO356_08915 0.63 +0.6 2,010,914 - AO356_08915 0.63 +1.6 2,010,925 - AO356_08915 0.66 -0.9 2,010,925 - AO356_08915 0.66 +0.1 2,010,927 + AO356_08915 0.67 -0.2 2,010,948 - AO356_08915 0.72 -0.2 2,011,029 + -0.8 2,011,032 + +0.5 2,011,032 + -0.2 2,011,033 - -0.2 2,011,040 + -0.2 2,011,041 - +0.7 2,011,041 - +0.1 2,011,045 + -0.0 2,011,045 + +0.6 2,011,092 + +1.6 2,011,092 + -0.5 2,011,092 + -0.2 2,011,093 - +0.1 2,011,093 - +1.1 2,011,093 - +0.8 2,011,093 - +0.1 2,011,094 + +2.1 2,011,178 + -0.2 2,011,179 - +1.9 2,011,179 - +1.0
Or see this region's nucleotide sequence