Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06275

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06265 and AO356_06270 overlap by 4 nucleotidesAO356_06270 and AO356_06275 overlap by 1 nucleotidesAO356_06275 and AO356_06280 are separated by 223 nucleotides AO356_06265: AO356_06265 - chemotaxis protein CheR, at 1,388,332 to 1,389,597 _06265 AO356_06270: AO356_06270 - chemotaxis protein CheW, at 1,389,594 to 1,390,130 _06270 AO356_06275: AO356_06275 - chemotaxis protein, at 1,390,130 to 1,391,752 _06275 AO356_06280: AO356_06280 - hypothetical protein, at 1,391,976 to 1,392,686 _06280 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1 2at 1389.263 kb on + strand, within AO356_06265at 1389.461 kb on + strand, within AO356_06265at 1389.462 kb on - strand, within AO356_06265at 1390.482 kb on + strand, within AO356_06275at 1390.482 kb on + strand, within AO356_06275at 1390.482 kb on + strand, within AO356_06275at 1390.483 kb on - strand, within AO356_06275at 1390.483 kb on - strand, within AO356_06275at 1390.483 kb on - strand, within AO356_06275at 1390.552 kb on - strand, within AO356_06275at 1390.552 kb on - strand, within AO356_06275at 1391.144 kb on + strand, within AO356_06275at 1391.144 kb on + strand, within AO356_06275at 1391.249 kb on - strand, within AO356_06275at 1391.334 kb on + strand, within AO356_06275at 1391.334 kb on + strand, within AO356_06275at 1391.335 kb on - strand, within AO356_06275at 1391.335 kb on - strand, within AO356_06275at 1391.451 kb on + strand, within AO356_06275at 1391.451 kb on + strand, within AO356_06275at 1391.452 kb on - strand, within AO356_06275at 1391.459 kb on + strand, within AO356_06275at 1391.459 kb on + strand, within AO356_06275at 1391.459 kb on + strand, within AO356_06275at 1391.460 kb on - strand, within AO356_06275at 1391.460 kb on - strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.562 kb on + strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.563 kb on - strand, within AO356_06275at 1391.601 kb on + strandat 1391.601 kb on + strandat 1391.601 kb on + strandat 1391.601 kb on + strandat 1391.601 kb on + strandat 1391.602 kb on - strandat 1391.602 kb on - strandat 1391.602 kb on - strandat 1391.667 kb on + strandat 1391.668 kb on - strandat 1391.693 kb on - strandat 1391.693 kb on - strandat 1391.786 kb on + strandat 1391.786 kb on + strandat 1391.787 kb on - strandat 1391.787 kb on - strandat 1391.787 kb on - strandat 1391.787 kb on - strandat 1391.787 kb on - strandat 1391.812 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.898 kb on + strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.899 kb on - strandat 1391.961 kb on + strandat 1391.961 kb on + strandat 1391.962 kb on - strandat 1391.977 kb on + strandat 1391.977 kb on + strandat 1392.062 kb on - strand, within AO356_06280at 1392.062 kb on - strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.112 kb on + strand, within AO356_06280at 1392.113 kb on - strand, within AO356_06280at 1392.320 kb on + strand, within AO356_06280at 1392.320 kb on + strand, within AO356_06280at 1392.409 kb on + strand, within AO356_06280at 1392.409 kb on + strand, within AO356_06280at 1392.418 kb on + strand, within AO356_06280at 1392.451 kb on + strand, within AO356_06280at 1392.715 kb on + strandat 1392.715 kb on + strandat 1392.715 kb on + strandat 1392.715 kb on + strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.716 kb on - strandat 1392.729 kb on + strandat 1392.729 kb on + strandat 1392.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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1,389,263 + AO356_06265 0.74 +0.9
1,389,461 + AO356_06265 0.89 -0.4
1,389,462 - AO356_06265 0.89 -1.4
1,390,482 + AO356_06275 0.22 -0.4
1,390,482 + AO356_06275 0.22 +0.2
1,390,482 + AO356_06275 0.22 -1.4
1,390,483 - AO356_06275 0.22 -0.4
1,390,483 - AO356_06275 0.22 +0.9
1,390,483 - AO356_06275 0.22 -0.4
1,390,552 - AO356_06275 0.26 +1.0
1,390,552 - AO356_06275 0.26 -0.1
1,391,144 + AO356_06275 0.62 +0.2
1,391,144 + AO356_06275 0.62 -1.1
1,391,249 - AO356_06275 0.69 +0.6
1,391,334 + AO356_06275 0.74 -1.4
1,391,334 + AO356_06275 0.74 +1.2
1,391,335 - AO356_06275 0.74 -0.7
1,391,335 - AO356_06275 0.74 +2.2
1,391,451 + AO356_06275 0.81 +0.9
1,391,451 + AO356_06275 0.81 -0.4
1,391,452 - AO356_06275 0.81 -1.4
1,391,459 + AO356_06275 0.82 +0.2
1,391,459 + AO356_06275 0.82 +0.6
1,391,459 + AO356_06275 0.82 +0.6
1,391,460 - AO356_06275 0.82 -0.4
1,391,460 - AO356_06275 0.82 -0.4
1,391,562 + AO356_06275 0.88 +0.2
1,391,562 + AO356_06275 0.88 +2.2
1,391,562 + AO356_06275 0.88 +0.2
1,391,562 + AO356_06275 0.88 +1.6
1,391,562 + AO356_06275 0.88 +1.6
1,391,562 + AO356_06275 0.88 +1.6
1,391,562 + AO356_06275 0.88 +0.3
1,391,562 + AO356_06275 0.88 -0.4
1,391,562 + AO356_06275 0.88 -0.1
1,391,562 + AO356_06275 0.88 +0.9
1,391,562 + AO356_06275 0.88 -1.0
1,391,562 + AO356_06275 0.88 -0.6
1,391,562 + AO356_06275 0.88 -0.7
1,391,562 + AO356_06275 0.88 +2.2
1,391,563 - AO356_06275 0.88 +1.9
1,391,563 - AO356_06275 0.88 -0.4
1,391,563 - AO356_06275 0.88 -0.4
1,391,563 - AO356_06275 0.88 +0.2
1,391,563 - AO356_06275 0.88 +1.9
1,391,563 - AO356_06275 0.88 -0.4
1,391,563 - AO356_06275 0.88 -0.4
1,391,563 - AO356_06275 0.88 +0.0
1,391,563 - AO356_06275 0.88 -0.4
1,391,563 - AO356_06275 0.88 +0.4
1,391,563 - AO356_06275 0.88 -2.4
1,391,601 + -0.2
1,391,601 + -1.4
1,391,601 + +1.8
1,391,601 + -0.4
1,391,601 + -0.4
1,391,602 - +0.2
1,391,602 - +0.0
1,391,602 - +0.6
1,391,667 + +0.6
1,391,668 - +1.2
1,391,693 - -0.4
1,391,693 - +0.0
1,391,786 + +0.6
1,391,786 + +0.6
1,391,787 - -0.7
1,391,787 - +0.6
1,391,787 - -1.4
1,391,787 - -0.7
1,391,787 - -0.4
1,391,812 + +0.6
1,391,898 + -0.4
1,391,898 + -0.4
1,391,898 + +0.3
1,391,898 + -2.0
1,391,898 + +1.2
1,391,898 + +0.6
1,391,898 + +0.3
1,391,899 - -1.0
1,391,899 - -0.4
1,391,899 - +0.9
1,391,899 - -1.4
1,391,899 - +0.2
1,391,961 + +1.4
1,391,961 + +2.4
1,391,962 - -0.4
1,391,977 + +0.9
1,391,977 + -1.4
1,392,062 - AO356_06280 0.12 -1.5
1,392,062 - AO356_06280 0.12 +0.9
1,392,112 + AO356_06280 0.19 -2.4
1,392,112 + AO356_06280 0.19 +1.2
1,392,112 + AO356_06280 0.19 +1.2
1,392,112 + AO356_06280 0.19 +1.2
1,392,112 + AO356_06280 0.19 +0.2
1,392,113 - AO356_06280 0.19 -0.1
1,392,320 + AO356_06280 0.48 -0.4
1,392,320 + AO356_06280 0.48 +1.6
1,392,409 + AO356_06280 0.61 +1.2
1,392,409 + AO356_06280 0.61 +0.6
1,392,418 + AO356_06280 0.62 -0.4
1,392,451 + AO356_06280 0.67 +0.6
1,392,715 + +0.3
1,392,715 + +0.8
1,392,715 + +0.3
1,392,715 + -1.0
1,392,716 - -0.4
1,392,716 - +0.6
1,392,716 - -0.4
1,392,716 - -1.4
1,392,716 - +1.2
1,392,716 - -0.4
1,392,729 + +0.9
1,392,729 + -1.4
1,392,730 - +0.6

Or see this region's nucleotide sequence