Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05610 and AO356_05615 are separated by 59 nucleotides AO356_05615 and AO356_05620 are separated by 205 nucleotides AO356_05620 and AO356_05625 are separated by 203 nucleotides
AO356_05610: AO356_05610 - RNA-binding protein, at 1,258,065 to 1,258,775
_05610
AO356_05615: AO356_05615 - hypothetical protein, at 1,258,835 to 1,259,296
_05615
AO356_05620: AO356_05620 - tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA, at 1,259,502 to 1,260,200
_05620
AO356_05625: AO356_05625 - ferredoxin-NADP reductase, at 1,260,404 to 1,261,183
_05625
Position (kb) 1259
1260
1261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1258.557 kb on + strand, within AO356_05610 at 1258.557 kb on + strand, within AO356_05610 at 1258.558 kb on - strand, within AO356_05610 at 1258.558 kb on - strand, within AO356_05610 at 1258.558 kb on - strand, within AO356_05610 at 1258.558 kb on - strand, within AO356_05610 at 1258.750 kb on - strand at 1258.773 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.832 kb on + strand at 1258.833 kb on - strand at 1258.833 kb on - strand at 1258.833 kb on - strand at 1258.833 kb on - strand at 1258.833 kb on - strand at 1258.851 kb on + strand at 1258.851 kb on + strand at 1258.851 kb on + strand at 1258.851 kb on + strand at 1258.852 kb on - strand at 1258.852 kb on - strand at 1258.868 kb on + strand at 1258.868 kb on + strand at 1258.868 kb on + strand at 1258.868 kb on + strand at 1258.868 kb on + strand at 1258.868 kb on + strand at 1258.869 kb on - strand at 1258.869 kb on - strand at 1258.869 kb on - strand at 1258.952 kb on + strand, within AO356_05615 at 1258.953 kb on - strand, within AO356_05615 at 1259.228 kb on + strand, within AO356_05615 at 1259.228 kb on + strand, within AO356_05615 at 1259.508 kb on + strand at 1259.508 kb on + strand at 1259.508 kb on + strand at 1259.508 kb on + strand at 1259.508 kb on + strand at 1259.509 kb on - strand at 1259.509 kb on - strand at 1259.509 kb on - strand at 1259.509 kb on - strand at 1259.898 kb on + strand, within AO356_05620 at 1259.898 kb on + strand, within AO356_05620 at 1259.898 kb on + strand, within AO356_05620 at 1259.898 kb on + strand, within AO356_05620 at 1259.899 kb on - strand, within AO356_05620 at 1259.908 kb on - strand, within AO356_05620 at 1260.081 kb on + strand, within AO356_05620 at 1260.081 kb on + strand, within AO356_05620 at 1260.109 kb on - strand, within AO356_05620 at 1260.109 kb on - strand, within AO356_05620 at 1260.109 kb on - strand, within AO356_05620 at 1260.198 kb on + strand at 1260.198 kb on + strand at 1260.199 kb on - strand at 1260.199 kb on - strand at 1260.233 kb on - strand at 1260.254 kb on + strand at 1260.254 kb on + strand at 1260.254 kb on + strand at 1260.254 kb on + strand at 1260.255 kb on - strand at 1260.255 kb on - strand at 1260.385 kb on + strand at 1260.385 kb on + strand at 1260.385 kb on + strand at 1260.386 kb on - strand at 1260.386 kb on - strand at 1260.386 kb on - strand at 1260.386 kb on - strand at 1260.386 kb on - strand at 1260.386 kb on - strand at 1260.405 kb on + strand at 1260.405 kb on + strand at 1260.405 kb on + strand at 1260.405 kb on + strand at 1260.405 kb on + strand at 1260.405 kb on + strand at 1260.405 kb on + strand at 1260.406 kb on - strand at 1260.406 kb on - strand at 1260.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 1,258,557 + AO356_05610 0.69 -0.5 1,258,557 + AO356_05610 0.69 -0.9 1,258,558 - AO356_05610 0.69 -1.2 1,258,558 - AO356_05610 0.69 +0.9 1,258,558 - AO356_05610 0.69 +2.7 1,258,558 - AO356_05610 0.69 -0.5 1,258,750 - -0.5 1,258,773 + +0.1 1,258,832 + -0.1 1,258,832 + +0.8 1,258,832 + -1.3 1,258,832 + -0.5 1,258,832 + +0.7 1,258,832 + +2.2 1,258,832 + +0.2 1,258,832 + +0.3 1,258,832 + -0.2 1,258,832 + +1.3 1,258,832 + +0.7 1,258,832 + +1.7 1,258,833 - +1.4 1,258,833 - +0.7 1,258,833 - -0.6 1,258,833 - +1.4 1,258,833 - -1.5 1,258,851 + +0.7 1,258,851 + +0.8 1,258,851 + -0.5 1,258,851 + -0.1 1,258,852 - +0.9 1,258,852 - -0.9 1,258,868 + -0.5 1,258,868 + -0.8 1,258,868 + -0.7 1,258,868 + -0.5 1,258,868 + -0.2 1,258,868 + +1.0 1,258,869 - -1.3 1,258,869 - -0.5 1,258,869 - +0.9 1,258,952 + AO356_05615 0.25 -0.1 1,258,953 - AO356_05615 0.26 -0.5 1,259,228 + AO356_05615 0.85 +0.9 1,259,228 + AO356_05615 0.85 -0.2 1,259,508 + +0.5 1,259,508 + +1.7 1,259,508 + -1.5 1,259,508 + +0.5 1,259,508 + +0.5 1,259,509 - -0.5 1,259,509 - -0.5 1,259,509 - +0.5 1,259,509 - +0.9 1,259,898 + AO356_05620 0.57 -0.8 1,259,898 + AO356_05620 0.57 -0.2 1,259,898 + AO356_05620 0.57 -0.8 1,259,898 + AO356_05620 0.57 -0.5 1,259,899 - AO356_05620 0.57 -0.1 1,259,908 - AO356_05620 0.58 -0.1 1,260,081 + AO356_05620 0.83 +0.5 1,260,081 + AO356_05620 0.83 +1.1 1,260,109 - AO356_05620 0.87 +1.4 1,260,109 - AO356_05620 0.87 +2.4 1,260,109 - AO356_05620 0.87 -0.5 1,260,198 + -0.5 1,260,198 + -3.3 1,260,199 - +0.5 1,260,199 - -0.9 1,260,233 - -0.5 1,260,254 + +2.1 1,260,254 + -0.5 1,260,254 + -0.5 1,260,254 + -0.5 1,260,255 - -0.7 1,260,255 - +1.1 1,260,385 + -0.0 1,260,385 + -0.3 1,260,385 + +1.9 1,260,386 - +0.1 1,260,386 - -0.5 1,260,386 - -0.0 1,260,386 - -0.2 1,260,386 - -0.2 1,260,386 - -0.7 1,260,405 + +0.1 1,260,405 + -0.9 1,260,405 + +0.4 1,260,405 + -0.2 1,260,405 + +0.5 1,260,405 + +2.2 1,260,405 + -1.0 1,260,406 - +0.5 1,260,406 - +1.0 1,260,406 - +0.1
Or see this region's nucleotide sequence