Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05565

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05560 and AO356_05565 are separated by 17 nucleotidesAO356_05565 and AO356_05570 are separated by 158 nucleotides AO356_05560: AO356_05560 - proline--tRNA ligase, at 1,244,634 to 1,246,349 _05560 AO356_05565: AO356_05565 - hypothetical protein, at 1,246,367 to 1,247,320 _05565 AO356_05570: AO356_05570 - DNA polymerase IV, at 1,247,479 to 1,248,540 _05570 Position (kb) 1246 1247 1248Strain fitness (log2 ratio) -2 -1 0 1 2at 1246.358 kb on - strandat 1246.358 kb on - strandat 1246.386 kb on + strandat 1246.386 kb on + strandat 1246.386 kb on + strandat 1246.610 kb on + strand, within AO356_05565at 1246.610 kb on + strand, within AO356_05565at 1246.610 kb on + strand, within AO356_05565at 1246.610 kb on + strand, within AO356_05565at 1246.649 kb on + strand, within AO356_05565at 1246.650 kb on - strand, within AO356_05565at 1246.760 kb on + strand, within AO356_05565at 1246.761 kb on - strand, within AO356_05565at 1247.077 kb on + strand, within AO356_05565at 1247.077 kb on + strand, within AO356_05565at 1247.078 kb on - strand, within AO356_05565at 1247.117 kb on + strand, within AO356_05565at 1247.117 kb on + strand, within AO356_05565at 1247.314 kb on + strandat 1247.323 kb on + strandat 1247.323 kb on + strandat 1247.324 kb on - strandat 1247.324 kb on - strandat 1247.600 kb on + strand, within AO356_05570at 1247.600 kb on + strand, within AO356_05570at 1247.601 kb on - strand, within AO356_05570at 1247.601 kb on - strand, within AO356_05570at 1247.789 kb on + strand, within AO356_05570at 1247.789 kb on + strand, within AO356_05570at 1247.789 kb on + strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.790 kb on - strand, within AO356_05570at 1247.793 kb on + strand, within AO356_05570at 1247.794 kb on - strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.983 kb on + strand, within AO356_05570at 1247.984 kb on - strand, within AO356_05570at 1247.984 kb on - strand, within AO356_05570at 1247.984 kb on - strand, within AO356_05570at 1248.159 kb on + strand, within AO356_05570at 1248.160 kb on - strand, within AO356_05570at 1248.257 kb on + strand, within AO356_05570at 1248.257 kb on + strand, within AO356_05570at 1248.257 kb on + strand, within AO356_05570at 1248.258 kb on - strand, within AO356_05570at 1248.274 kb on - strand, within AO356_05570

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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1,246,358 - -0.5
1,246,358 - +0.0
1,246,386 + -2.0
1,246,386 + +0.4
1,246,386 + -1.3
1,246,610 + AO356_05565 0.25 -1.1
1,246,610 + AO356_05565 0.25 -0.0
1,246,610 + AO356_05565 0.25 +0.1
1,246,610 + AO356_05565 0.25 +0.0
1,246,649 + AO356_05565 0.30 -0.5
1,246,650 - AO356_05565 0.30 -1.5
1,246,760 + AO356_05565 0.41 -0.5
1,246,761 - AO356_05565 0.41 -1.3
1,247,077 + AO356_05565 0.74 -1.2
1,247,077 + AO356_05565 0.74 +0.3
1,247,078 - AO356_05565 0.75 +1.3
1,247,117 + AO356_05565 0.79 -0.5
1,247,117 + AO356_05565 0.79 +0.5
1,247,314 + -0.5
1,247,323 + +1.5
1,247,323 + +0.1
1,247,324 - -1.6
1,247,324 - -0.0
1,247,600 + AO356_05570 0.11 +0.5
1,247,600 + AO356_05570 0.11 +1.5
1,247,601 - AO356_05570 0.11 +0.5
1,247,601 - AO356_05570 0.11 +1.0
1,247,789 + AO356_05570 0.29 -0.5
1,247,789 + AO356_05570 0.29 +0.0
1,247,789 + AO356_05570 0.29 -1.0
1,247,790 - AO356_05570 0.29 +0.4
1,247,790 - AO356_05570 0.29 +0.9
1,247,790 - AO356_05570 0.29 -0.7
1,247,790 - AO356_05570 0.29 +0.9
1,247,790 - AO356_05570 0.29 -0.2
1,247,790 - AO356_05570 0.29 -0.5
1,247,790 - AO356_05570 0.29 -0.2
1,247,790 - AO356_05570 0.29 +1.5
1,247,793 + AO356_05570 0.30 -2.5
1,247,794 - AO356_05570 0.30 -0.5
1,247,983 + AO356_05570 0.47 +2.5
1,247,983 + AO356_05570 0.47 -0.5
1,247,983 + AO356_05570 0.47 +0.1
1,247,983 + AO356_05570 0.47 -0.5
1,247,983 + AO356_05570 0.47 -0.5
1,247,983 + AO356_05570 0.47 -0.7
1,247,983 + AO356_05570 0.47 +2.1
1,247,984 - AO356_05570 0.48 +0.7
1,247,984 - AO356_05570 0.48 +0.4
1,247,984 - AO356_05570 0.48 +0.1
1,248,159 + AO356_05570 0.64 +0.4
1,248,160 - AO356_05570 0.64 -1.5
1,248,257 + AO356_05570 0.73 +1.5
1,248,257 + AO356_05570 0.73 -1.0
1,248,257 + AO356_05570 0.73 -0.7
1,248,258 - AO356_05570 0.73 -0.3
1,248,274 - AO356_05570 0.75 +0.5

Or see this region's nucleotide sequence