Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05500

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05495 and AO356_05500 are separated by 57 nucleotidesAO356_05500 and AO356_05505 overlap by 4 nucleotidesAO356_05505 and AO356_05510 are separated by 27 nucleotides AO356_05495: AO356_05495 - ABC transporter for L-Lysine, periplasmic substrate-binding component (from data), at 1,232,150 to 1,232,932 _05495 AO356_05500: AO356_05500 - ABC transporter for L-Lysine, permease component 1 (from data), at 1,232,990 to 1,233,718 _05500 AO356_05505: AO356_05505 - ABC transporter for L-Lysine, permease component 2 (from data), at 1,233,715 to 1,234,425 _05505 AO356_05510: AO356_05510 - succinylglutamate desuccinylase, at 1,234,453 to 1,235,571 _05510 Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1232.019 kb on + strandat 1232.020 kb on - strandat 1232.020 kb on - strandat 1232.028 kb on - strandat 1232.028 kb on - strandat 1232.028 kb on - strandat 1232.046 kb on + strandat 1232.046 kb on + strandat 1232.046 kb on + strandat 1232.046 kb on + strandat 1232.047 kb on - strandat 1232.063 kb on + strandat 1232.063 kb on + strandat 1232.064 kb on - strandat 1232.064 kb on - strandat 1232.069 kb on + strandat 1232.069 kb on + strandat 1232.070 kb on - strandat 1232.070 kb on - strandat 1232.079 kb on + strandat 1232.101 kb on - strandat 1232.109 kb on + strandat 1232.109 kb on + strandat 1232.110 kb on - strandat 1232.110 kb on - strandat 1232.110 kb on - strandat 1232.138 kb on - strandat 1232.222 kb on + strandat 1232.222 kb on + strandat 1232.222 kb on + strandat 1232.223 kb on - strandat 1232.255 kb on + strand, within AO356_05495at 1232.256 kb on - strand, within AO356_05495at 1232.402 kb on - strand, within AO356_05495at 1232.495 kb on + strand, within AO356_05495at 1232.495 kb on + strand, within AO356_05495at 1232.495 kb on + strand, within AO356_05495at 1232.495 kb on + strand, within AO356_05495at 1232.495 kb on + strand, within AO356_05495at 1232.496 kb on - strand, within AO356_05495at 1232.496 kb on - strand, within AO356_05495at 1232.496 kb on - strand, within AO356_05495at 1232.561 kb on + strand, within AO356_05495at 1232.588 kb on + strand, within AO356_05495at 1232.588 kb on + strand, within AO356_05495at 1232.589 kb on - strand, within AO356_05495at 1232.633 kb on + strand, within AO356_05495at 1232.634 kb on - strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.654 kb on + strand, within AO356_05495at 1232.655 kb on - strand, within AO356_05495at 1232.747 kb on + strand, within AO356_05495at 1232.747 kb on + strand, within AO356_05495at 1232.748 kb on - strand, within AO356_05495at 1232.815 kb on + strand, within AO356_05495at 1232.816 kb on - strand, within AO356_05495at 1232.816 kb on - strand, within AO356_05495at 1232.842 kb on + strand, within AO356_05495at 1232.843 kb on - strand, within AO356_05495at 1232.860 kb on - strandat 1232.860 kb on - strandat 1232.876 kb on + strandat 1232.918 kb on + strandat 1232.919 kb on - strandat 1232.930 kb on + strandat 1232.931 kb on - strandat 1232.931 kb on - strandat 1233.006 kb on + strandat 1233.007 kb on - strandat 1233.007 kb on - strandat 1233.185 kb on + strand, within AO356_05500at 1233.185 kb on + strand, within AO356_05500at 1233.185 kb on + strand, within AO356_05500at 1233.185 kb on + strand, within AO356_05500at 1233.185 kb on + strand, within AO356_05500at 1233.186 kb on - strand, within AO356_05500at 1233.186 kb on - strand, within AO356_05500at 1233.239 kb on + strand, within AO356_05500at 1233.239 kb on + strand, within AO356_05500at 1233.239 kb on + strand, within AO356_05500at 1233.290 kb on + strand, within AO356_05500at 1233.290 kb on + strand, within AO356_05500at 1233.290 kb on + strand, within AO356_05500at 1233.290 kb on + strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.291 kb on - strand, within AO356_05500at 1233.341 kb on + strand, within AO356_05500at 1233.341 kb on + strand, within AO356_05500at 1233.342 kb on - strand, within AO356_05500at 1233.342 kb on - strand, within AO356_05500at 1233.350 kb on + strand, within AO356_05500at 1233.351 kb on - strand, within AO356_05500at 1233.351 kb on - strand, within AO356_05500at 1233.420 kb on - strand, within AO356_05500at 1233.420 kb on - strand, within AO356_05500at 1233.593 kb on + strand, within AO356_05500at 1233.593 kb on + strand, within AO356_05500at 1233.594 kb on - strand, within AO356_05500at 1233.594 kb on - strand, within AO356_05500at 1233.594 kb on - strand, within AO356_05500at 1233.605 kb on + strand, within AO356_05500at 1233.606 kb on - strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.632 kb on + strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.633 kb on - strand, within AO356_05500at 1233.736 kb on + strandat 1233.737 kb on - strandat 1233.737 kb on - strandat 1233.754 kb on + strandat 1233.754 kb on + strandat 1233.755 kb on - strandat 1233.874 kb on + strand, within AO356_05505at 1233.874 kb on + strand, within AO356_05505at 1233.874 kb on + strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.875 kb on - strand, within AO356_05505at 1233.878 kb on + strand, within AO356_05505at 1233.879 kb on - strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.898 kb on + strand, within AO356_05505at 1233.904 kb on + strand, within AO356_05505at 1233.904 kb on + strand, within AO356_05505at 1233.904 kb on + strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.905 kb on - strand, within AO356_05505at 1233.928 kb on + strand, within AO356_05505at 1233.928 kb on + strand, within AO356_05505at 1233.928 kb on + strand, within AO356_05505at 1233.929 kb on - strand, within AO356_05505at 1233.929 kb on - strand, within AO356_05505at 1233.949 kb on + strand, within AO356_05505at 1233.949 kb on + strand, within AO356_05505at 1233.950 kb on - strand, within AO356_05505at 1233.951 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.961 kb on + strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1233.962 kb on - strand, within AO356_05505at 1234.060 kb on + strand, within AO356_05505at 1234.060 kb on + strand, within AO356_05505at 1234.060 kb on + strand, within AO356_05505at 1234.061 kb on - strand, within AO356_05505at 1234.153 kb on + strand, within AO356_05505at 1234.154 kb on - strand, within AO356_05505at 1234.159 kb on + strand, within AO356_05505at 1234.159 kb on + strand, within AO356_05505at 1234.160 kb on - strand, within AO356_05505at 1234.199 kb on - strand, within AO356_05505at 1234.199 kb on - strand, within AO356_05505at 1234.201 kb on + strand, within AO356_05505at 1234.202 kb on - strand, within AO356_05505at 1234.202 kb on - strand, within AO356_05505at 1234.343 kb on - strand, within AO356_05505at 1234.343 kb on - strand, within AO356_05505at 1234.343 kb on - strand, within AO356_05505at 1234.552 kb on + strandat 1234.552 kb on + strandat 1234.552 kb on + strandat 1234.552 kb on + strandat 1234.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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1,232,019 + +2.4
1,232,020 - -0.5
1,232,020 - +1.1
1,232,028 - +1.3
1,232,028 - +0.3
1,232,028 - -0.5
1,232,046 + +0.3
1,232,046 + +0.9
1,232,046 + +0.2
1,232,046 + +1.9
1,232,047 - -0.5
1,232,063 + -0.5
1,232,063 + -0.1
1,232,064 - +0.5
1,232,064 - -1.5
1,232,069 + -0.1
1,232,069 + -1.5
1,232,070 - +1.5
1,232,070 - -0.5
1,232,079 + -0.5
1,232,101 - +0.8
1,232,109 + -0.5
1,232,109 + +1.9
1,232,110 - +1.1
1,232,110 - -0.5
1,232,110 - -0.7
1,232,138 - +1.5
1,232,222 + -1.5
1,232,222 + -1.0
1,232,222 + -0.7
1,232,223 - -2.8
1,232,255 + AO356_05495 0.13 +0.6
1,232,256 - AO356_05495 0.14 +0.1
1,232,402 - AO356_05495 0.32 -1.8
1,232,495 + AO356_05495 0.44 +1.9
1,232,495 + AO356_05495 0.44 +0.1
1,232,495 + AO356_05495 0.44 +1.1
1,232,495 + AO356_05495 0.44 -0.2
1,232,495 + AO356_05495 0.44 -1.5
1,232,496 - AO356_05495 0.44 -2.0
1,232,496 - AO356_05495 0.44 -0.5
1,232,496 - AO356_05495 0.44 +2.1
1,232,561 + AO356_05495 0.52 -2.5
1,232,588 + AO356_05495 0.56 -1.5
1,232,588 + AO356_05495 0.56 +0.4
1,232,589 - AO356_05495 0.56 -0.5
1,232,633 + AO356_05495 0.62 -0.8
1,232,634 - AO356_05495 0.62 +0.5
1,232,654 + AO356_05495 0.64 +0.5
1,232,654 + AO356_05495 0.64 +1.5
1,232,654 + AO356_05495 0.64 -0.2
1,232,654 + AO356_05495 0.64 -0.9
1,232,654 + AO356_05495 0.64 +0.0
1,232,654 + AO356_05495 0.64 -1.0
1,232,654 + AO356_05495 0.64 -0.5
1,232,655 - AO356_05495 0.64 -0.5
1,232,747 + AO356_05495 0.76 +0.4
1,232,747 + AO356_05495 0.76 +1.5
1,232,748 - AO356_05495 0.76 +0.5
1,232,815 + AO356_05495 0.85 +0.5
1,232,816 - AO356_05495 0.85 -1.1
1,232,816 - AO356_05495 0.85 -1.5
1,232,842 + AO356_05495 0.88 +0.5
1,232,843 - AO356_05495 0.89 +2.5
1,232,860 - +0.4
1,232,860 - -0.5
1,232,876 + +1.1
1,232,918 + -1.5
1,232,919 - +0.1
1,232,930 + -0.5
1,232,931 - +0.7
1,232,931 - -0.5
1,233,006 + +2.1
1,233,007 - -2.0
1,233,007 - +0.9
1,233,185 + AO356_05500 0.27 -0.5
1,233,185 + AO356_05500 0.27 -0.6
1,233,185 + AO356_05500 0.27 -0.5
1,233,185 + AO356_05500 0.27 -0.5
1,233,185 + AO356_05500 0.27 +0.5
1,233,186 - AO356_05500 0.27 -1.3
1,233,186 - AO356_05500 0.27 +1.0
1,233,239 + AO356_05500 0.34 +1.9
1,233,239 + AO356_05500 0.34 -1.5
1,233,239 + AO356_05500 0.34 -0.5
1,233,290 + AO356_05500 0.41 -1.3
1,233,290 + AO356_05500 0.41 -0.5
1,233,290 + AO356_05500 0.41 -0.5
1,233,290 + AO356_05500 0.41 -0.0
1,233,291 - AO356_05500 0.41 -0.5
1,233,291 - AO356_05500 0.41 +0.9
1,233,291 - AO356_05500 0.41 -0.1
1,233,291 - AO356_05500 0.41 +0.5
1,233,291 - AO356_05500 0.41 -2.3
1,233,291 - AO356_05500 0.41 -0.5
1,233,291 - AO356_05500 0.41 +0.1
1,233,341 + AO356_05500 0.48 +1.5
1,233,341 + AO356_05500 0.48 +0.8
1,233,342 - AO356_05500 0.48 +0.1
1,233,342 - AO356_05500 0.48 +0.3
1,233,350 + AO356_05500 0.49 -0.5
1,233,351 - AO356_05500 0.50 -0.9
1,233,351 - AO356_05500 0.50 +1.4
1,233,420 - AO356_05500 0.59 -0.5
1,233,420 - AO356_05500 0.59 -0.5
1,233,593 + AO356_05500 0.83 +0.1
1,233,593 + AO356_05500 0.83 +1.5
1,233,594 - AO356_05500 0.83 -0.5
1,233,594 - AO356_05500 0.83 -1.5
1,233,594 - AO356_05500 0.83 -1.8
1,233,605 + AO356_05500 0.84 +0.2
1,233,606 - AO356_05500 0.84 -1.5
1,233,632 + AO356_05500 0.88 +2.9
1,233,632 + AO356_05500 0.88 -0.9
1,233,632 + AO356_05500 0.88 +1.6
1,233,632 + AO356_05500 0.88 +1.7
1,233,632 + AO356_05500 0.88 +2.1
1,233,632 + AO356_05500 0.88 -0.5
1,233,633 - AO356_05500 0.88 +0.3
1,233,633 - AO356_05500 0.88 -1.2
1,233,633 - AO356_05500 0.88 -0.3
1,233,633 - AO356_05500 0.88 +0.5
1,233,633 - AO356_05500 0.88 +1.1
1,233,736 + -0.5
1,233,737 - +1.5
1,233,737 - +0.1
1,233,754 + +0.0
1,233,754 + +0.5
1,233,755 - +1.9
1,233,874 + AO356_05505 0.22 +3.5
1,233,874 + AO356_05505 0.22 -0.5
1,233,874 + AO356_05505 0.22 -0.5
1,233,875 - AO356_05505 0.23 -0.2
1,233,875 - AO356_05505 0.23 +1.5
1,233,875 - AO356_05505 0.23 -0.5
1,233,875 - AO356_05505 0.23 -0.7
1,233,878 + AO356_05505 0.23 +0.5
1,233,879 - AO356_05505 0.23 +0.4
1,233,898 + AO356_05505 0.26 +1.1
1,233,898 + AO356_05505 0.26 +1.5
1,233,898 + AO356_05505 0.26 -0.5
1,233,898 + AO356_05505 0.26 -0.5
1,233,898 + AO356_05505 0.26 -0.5
1,233,898 + AO356_05505 0.26 +1.1
1,233,904 + AO356_05505 0.27 +0.5
1,233,904 + AO356_05505 0.27 -1.5
1,233,904 + AO356_05505 0.27 +0.5
1,233,905 - AO356_05505 0.27 +0.4
1,233,905 - AO356_05505 0.27 -0.5
1,233,905 - AO356_05505 0.27 +0.5
1,233,905 - AO356_05505 0.27 +0.5
1,233,905 - AO356_05505 0.27 -0.7
1,233,905 - AO356_05505 0.27 -2.5
1,233,905 - AO356_05505 0.27 -2.0
1,233,905 - AO356_05505 0.27 -0.1
1,233,905 - AO356_05505 0.27 +0.1
1,233,928 + AO356_05505 0.30 +2.2
1,233,928 + AO356_05505 0.30 +2.0
1,233,928 + AO356_05505 0.30 +0.8
1,233,929 - AO356_05505 0.30 +0.9
1,233,929 - AO356_05505 0.30 +0.3
1,233,949 + AO356_05505 0.33 +1.7
1,233,949 + AO356_05505 0.33 +0.4
1,233,950 - AO356_05505 0.33 +0.4
1,233,951 + AO356_05505 0.33 -0.5
1,233,961 + AO356_05505 0.35 +0.5
1,233,961 + AO356_05505 0.35 +0.8
1,233,961 + AO356_05505 0.35 +3.0
1,233,961 + AO356_05505 0.35 +1.1
1,233,961 + AO356_05505 0.35 +0.1
1,233,962 - AO356_05505 0.35 -0.5
1,233,962 - AO356_05505 0.35 +1.0
1,233,962 - AO356_05505 0.35 +0.5
1,233,962 - AO356_05505 0.35 -1.5
1,233,962 - AO356_05505 0.35 +0.5
1,233,962 - AO356_05505 0.35 -0.1
1,234,060 + AO356_05505 0.49 +0.5
1,234,060 + AO356_05505 0.49 +0.1
1,234,060 + AO356_05505 0.49 -0.1
1,234,061 - AO356_05505 0.49 +0.5
1,234,153 + AO356_05505 0.62 +2.7
1,234,154 - AO356_05505 0.62 -0.5
1,234,159 + AO356_05505 0.62 -0.1
1,234,159 + AO356_05505 0.62 +0.5
1,234,160 - AO356_05505 0.63 +0.5
1,234,199 - AO356_05505 0.68 -1.5
1,234,199 - AO356_05505 0.68 +0.9
1,234,201 + AO356_05505 0.68 -1.5
1,234,202 - AO356_05505 0.68 -0.0
1,234,202 - AO356_05505 0.68 -0.8
1,234,343 - AO356_05505 0.88 +1.5
1,234,343 - AO356_05505 0.88 +0.3
1,234,343 - AO356_05505 0.88 +0.1
1,234,552 + -0.5
1,234,552 + +0.7
1,234,552 + +1.5
1,234,552 + -1.0
1,234,553 - -0.6

Or see this region's nucleotide sequence