Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04445

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04440 and AO356_04445 are separated by 3 nucleotidesAO356_04445 and AO356_04450 are separated by 103 nucleotides AO356_04440: AO356_04440 - LysR family transcriptional regulator, at 1,006,448 to 1,007,380 _04440 AO356_04445: AO356_04445 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 1,007,384 to 1,007,749 _04445 AO356_04450: AO356_04450 - LysR family transcriptional regulator, at 1,007,853 to 1,008,776 _04450 Position (kb) 1007 1008Strain fitness (log2 ratio) -1 0 1 2 3at 1006.459 kb on + strandat 1006.459 kb on + strandat 1006.459 kb on + strandat 1006.459 kb on + strandat 1006.459 kb on + strandat 1006.460 kb on - strandat 1006.460 kb on - strandat 1006.460 kb on - strandat 1006.511 kb on + strandat 1006.511 kb on + strandat 1006.512 kb on - strandat 1006.574 kb on + strand, within AO356_04440at 1006.574 kb on + strand, within AO356_04440at 1006.574 kb on + strand, within AO356_04440at 1006.574 kb on + strand, within AO356_04440at 1006.574 kb on + strand, within AO356_04440at 1006.575 kb on - strand, within AO356_04440at 1006.618 kb on + strand, within AO356_04440at 1006.649 kb on + strand, within AO356_04440at 1006.649 kb on + strand, within AO356_04440at 1006.650 kb on - strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.667 kb on + strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.668 kb on - strand, within AO356_04440at 1006.759 kb on + strand, within AO356_04440at 1006.759 kb on + strand, within AO356_04440at 1006.821 kb on - strand, within AO356_04440at 1007.153 kb on + strand, within AO356_04440at 1007.153 kb on + strand, within AO356_04440at 1007.153 kb on + strand, within AO356_04440at 1007.153 kb on + strand, within AO356_04440at 1007.153 kb on + strand, within AO356_04440at 1007.154 kb on - strand, within AO356_04440at 1007.154 kb on - strand, within AO356_04440at 1007.154 kb on - strand, within AO356_04440at 1007.154 kb on - strand, within AO356_04440at 1007.281 kb on + strand, within AO356_04440at 1007.281 kb on + strand, within AO356_04440at 1007.282 kb on - strand, within AO356_04440at 1007.583 kb on - strand, within AO356_04445at 1007.727 kb on + strandat 1007.728 kb on - strandat 1007.728 kb on - strandat 1007.728 kb on - strandat 1007.728 kb on - strandat 1007.772 kb on + strandat 1007.803 kb on + strandat 1007.803 kb on + strandat 1007.803 kb on + strandat 1007.804 kb on - strandat 1007.804 kb on - strandat 1007.804 kb on - strandat 1008.032 kb on + strand, within AO356_04450at 1008.034 kb on + strand, within AO356_04450at 1008.091 kb on + strand, within AO356_04450at 1008.092 kb on - strand, within AO356_04450at 1008.092 kb on - strand, within AO356_04450at 1008.092 kb on - strand, within AO356_04450at 1008.205 kb on + strand, within AO356_04450at 1008.205 kb on + strand, within AO356_04450at 1008.205 kb on + strand, within AO356_04450at 1008.206 kb on - strand, within AO356_04450at 1008.206 kb on - strand, within AO356_04450at 1008.206 kb on - strand, within AO356_04450at 1008.237 kb on - strand, within AO356_04450

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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1,006,459 + -0.4
1,006,459 + +0.2
1,006,459 + +1.2
1,006,459 + -1.5
1,006,459 + +1.8
1,006,460 - +0.5
1,006,460 - +2.1
1,006,460 - -0.9
1,006,511 + +3.0
1,006,511 + +2.1
1,006,512 - +0.2
1,006,574 + AO356_04440 0.14 -0.5
1,006,574 + AO356_04440 0.14 +0.1
1,006,574 + AO356_04440 0.14 +1.7
1,006,574 + AO356_04440 0.14 -0.5
1,006,574 + AO356_04440 0.14 +1.1
1,006,575 - AO356_04440 0.14 -1.1
1,006,618 + AO356_04440 0.18 -1.1
1,006,649 + AO356_04440 0.22 +0.1
1,006,649 + AO356_04440 0.22 -1.1
1,006,650 - AO356_04440 0.22 +1.1
1,006,667 + AO356_04440 0.23 +1.5
1,006,667 + AO356_04440 0.23 -1.3
1,006,667 + AO356_04440 0.23 +1.1
1,006,667 + AO356_04440 0.23 +0.8
1,006,667 + AO356_04440 0.23 +0.3
1,006,667 + AO356_04440 0.23 -0.1
1,006,667 + AO356_04440 0.23 +1.3
1,006,667 + AO356_04440 0.23 +1.3
1,006,668 - AO356_04440 0.24 -0.5
1,006,668 - AO356_04440 0.24 +0.4
1,006,668 - AO356_04440 0.24 +3.1
1,006,668 - AO356_04440 0.24 +0.7
1,006,668 - AO356_04440 0.24 +0.3
1,006,668 - AO356_04440 0.24 +1.5
1,006,668 - AO356_04440 0.24 +0.2
1,006,668 - AO356_04440 0.24 -0.5
1,006,759 + AO356_04440 0.33 +0.2
1,006,759 + AO356_04440 0.33 +0.1
1,006,821 - AO356_04440 0.40 +1.0
1,007,153 + AO356_04440 0.76 +1.8
1,007,153 + AO356_04440 0.76 +0.4
1,007,153 + AO356_04440 0.76 +1.1
1,007,153 + AO356_04440 0.76 +1.7
1,007,153 + AO356_04440 0.76 -0.9
1,007,154 - AO356_04440 0.76 -0.1
1,007,154 - AO356_04440 0.76 +1.2
1,007,154 - AO356_04440 0.76 +1.7
1,007,154 - AO356_04440 0.76 +0.3
1,007,281 + AO356_04440 0.89 -0.5
1,007,281 + AO356_04440 0.89 +0.7
1,007,282 - AO356_04440 0.89 -0.8
1,007,583 - AO356_04445 0.54 -0.7
1,007,727 + +0.5
1,007,728 - +1.5
1,007,728 - +1.3
1,007,728 - -0.2
1,007,728 - -0.5
1,007,772 + +0.2
1,007,803 + +0.8
1,007,803 + +1.3
1,007,803 + -0.1
1,007,804 - -0.5
1,007,804 - +0.4
1,007,804 - +2.3
1,008,032 + AO356_04450 0.19 -0.5
1,008,034 + AO356_04450 0.20 -0.5
1,008,091 + AO356_04450 0.26 +0.5
1,008,092 - AO356_04450 0.26 +0.1
1,008,092 - AO356_04450 0.26 -0.8
1,008,092 - AO356_04450 0.26 +0.5
1,008,205 + AO356_04450 0.38 +0.5
1,008,205 + AO356_04450 0.38 +0.8
1,008,205 + AO356_04450 0.38 +1.7
1,008,206 - AO356_04450 0.38 -0.5
1,008,206 - AO356_04450 0.38 +0.5
1,008,206 - AO356_04450 0.38 +1.1
1,008,237 - AO356_04450 0.42 +0.8

Or see this region's nucleotide sequence