Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04275 and AO356_04280 are separated by 329 nucleotides AO356_04280 and AO356_04285 are separated by 229 nucleotides
AO356_04275: AO356_04275 - 3-oxoacyl-ACP synthase, at 969,563 to 970,684
_04275
AO356_04280: AO356_04280 - ATP-dependent RNA helicase HrpA, at 971,014 to 974,925
_04280
AO356_04285: AO356_04285 - isocitrate dehydrogenase, at 975,155 to 976,876
_04285
Position (kb) 971
972
973
974
975 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.596 kb on + strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.597 kb on - strand at 970.600 kb on + strand at 970.600 kb on + strand at 970.600 kb on + strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.601 kb on - strand at 970.650 kb on + strand at 970.650 kb on + strand at 970.650 kb on + strand at 970.651 kb on - strand at 970.651 kb on - strand at 970.679 kb on - strand at 970.679 kb on - strand at 970.679 kb on - strand at 970.717 kb on + strand at 970.718 kb on - strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.731 kb on + strand at 970.732 kb on - strand at 970.732 kb on - strand at 970.732 kb on - strand at 970.738 kb on - strand at 970.738 kb on - strand at 970.738 kb on - strand at 970.785 kb on + strand at 970.786 kb on - strand at 970.836 kb on + strand at 970.836 kb on + strand at 970.836 kb on + strand at 970.837 kb on - strand at 970.838 kb on + strand at 970.839 kb on - strand at 970.839 kb on - strand at 970.857 kb on - strand at 971.106 kb on - strand at 971.126 kb on + strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.127 kb on - strand at 971.336 kb on + strand at 971.586 kb on + strand, within AO356_04280 at 971.587 kb on - strand, within AO356_04280 at 971.624 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.129 kb on + strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.130 kb on - strand, within AO356_04280 at 972.335 kb on + strand, within AO356_04280 at 972.335 kb on + strand, within AO356_04280 at 972.335 kb on + strand, within AO356_04280 at 972.336 kb on - strand, within AO356_04280 at 972.336 kb on - strand, within AO356_04280 at 972.658 kb on + strand, within AO356_04280 at 972.659 kb on - strand, within AO356_04280 at 972.713 kb on + strand, within AO356_04280 at 972.713 kb on + strand, within AO356_04280 at 972.739 kb on + strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.740 kb on - strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.767 kb on + strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.768 kb on - strand, within AO356_04280 at 972.884 kb on + strand, within AO356_04280 at 972.885 kb on - strand, within AO356_04280 at 973.080 kb on + strand, within AO356_04280 at 973.117 kb on + strand, within AO356_04280 at 973.117 kb on + strand, within AO356_04280 at 973.157 kb on + strand, within AO356_04280 at 973.158 kb on - strand, within AO356_04280 at 973.670 kb on + strand, within AO356_04280 at 973.671 kb on - strand, within AO356_04280 at 973.671 kb on - strand, within AO356_04280 at 973.743 kb on + strand, within AO356_04280 at 973.744 kb on - strand, within AO356_04280 at 973.744 kb on - strand, within AO356_04280 at 973.821 kb on - strand, within AO356_04280 at 973.934 kb on + strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 973.935 kb on - strand, within AO356_04280 at 974.271 kb on + strand, within AO356_04280 at 974.271 kb on + strand, within AO356_04280 at 974.272 kb on - strand, within AO356_04280 at 974.272 kb on - strand, within AO356_04280 at 974.272 kb on - strand, within AO356_04280 at 974.475 kb on - strand, within AO356_04280 at 974.724 kb on - strand at 974.931 kb on - strand at 975.080 kb on - strand at 975.080 kb on - strand at 975.080 kb on - strand at 975.080 kb on - strand at 975.156 kb on + strand at 975.176 kb on - strand at 975.252 kb on + strand at 975.252 kb on + strand at 975.252 kb on + strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.253 kb on - strand at 975.354 kb on + strand, within AO356_04285 at 975.355 kb on - strand, within AO356_04285 at 975.355 kb on - strand, within AO356_04285 at 975.355 kb on - strand, within AO356_04285 at 975.444 kb on + strand, within AO356_04285 at 975.445 kb on - strand, within AO356_04285 at 975.445 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.451 kb on - strand, within AO356_04285 at 975.514 kb on + strand, within AO356_04285 at 975.514 kb on + strand, within AO356_04285 at 975.514 kb on + strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.515 kb on - strand, within AO356_04285 at 975.549 kb on + strand, within AO356_04285 at 975.550 kb on - strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.597 kb on + strand, within AO356_04285 at 975.683 kb on + strand, within AO356_04285 at 975.683 kb on + strand, within AO356_04285 at 975.684 kb on - strand, within AO356_04285 at 975.684 kb on - strand, within AO356_04285 at 975.684 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285 at 975.802 kb on - strand, within AO356_04285
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 970,596 + +1.1 970,596 + +1.1 970,596 + +1.9 970,596 + -0.9 970,596 + +2.4 970,596 + -0.1 970,596 + +1.1 970,596 + +0.0 970,596 + -0.5 970,596 + -1.8 970,597 - +0.0 970,597 - +0.1 970,597 - -1.1 970,597 - +0.5 970,597 - +0.5 970,597 - -0.5 970,597 - -1.5 970,597 - +2.5 970,597 - +0.5 970,597 - +0.5 970,600 + -1.9 970,600 + +0.9 970,600 + +0.9 970,601 - +1.2 970,601 - +3.2 970,601 - -0.0 970,601 - +0.7 970,650 + -0.8 970,650 + -0.5 970,650 + -0.5 970,651 - +0.1 970,651 - -0.5 970,679 - +0.1 970,679 - +1.1 970,679 - -0.7 970,717 + +0.9 970,718 - -0.5 970,731 + -0.5 970,731 + -0.1 970,731 + +1.3 970,731 + +1.9 970,732 - +3.0 970,732 - -0.5 970,732 - -0.5 970,738 - +0.5 970,738 - -0.5 970,738 - +0.6 970,785 + +0.9 970,786 - +0.6 970,836 + -0.6 970,836 + -0.5 970,836 + +0.1 970,837 - -0.7 970,838 + -1.5 970,839 - +1.5 970,839 - -1.1 970,857 - -0.1 971,106 - +0.9 971,126 + -1.5 971,127 - +0.5 971,127 - -0.2 971,127 - +0.0 971,127 - -1.5 971,336 + -0.5 971,586 + AO356_04280 0.15 +1.1 971,587 - AO356_04280 0.15 +0.8 971,624 + AO356_04280 0.16 -0.5 972,129 + AO356_04280 0.29 +3.8 972,129 + AO356_04280 0.29 +1.1 972,129 + AO356_04280 0.29 +1.9 972,129 + AO356_04280 0.29 +0.9 972,129 + AO356_04280 0.29 +2.1 972,129 + AO356_04280 0.29 +0.5 972,129 + AO356_04280 0.29 -1.1 972,130 - AO356_04280 0.29 +1.5 972,130 - AO356_04280 0.29 -1.1 972,130 - AO356_04280 0.29 +0.5 972,130 - AO356_04280 0.29 +0.9 972,130 - AO356_04280 0.29 -0.5 972,335 + AO356_04280 0.34 -0.5 972,335 + AO356_04280 0.34 +0.5 972,335 + AO356_04280 0.34 -0.5 972,336 - AO356_04280 0.34 -0.1 972,336 - AO356_04280 0.34 +0.5 972,658 + AO356_04280 0.42 +2.9 972,659 - AO356_04280 0.42 +1.9 972,713 + AO356_04280 0.43 +0.0 972,713 + AO356_04280 0.43 +0.9 972,739 + AO356_04280 0.44 +2.1 972,740 - AO356_04280 0.44 -2.1 972,740 - AO356_04280 0.44 +0.5 972,740 - AO356_04280 0.44 +2.1 972,740 - AO356_04280 0.44 -0.5 972,740 - AO356_04280 0.44 +1.1 972,767 + AO356_04280 0.45 +0.1 972,767 + AO356_04280 0.45 -0.5 972,767 + AO356_04280 0.45 +1.5 972,767 + AO356_04280 0.45 +1.5 972,768 - AO356_04280 0.45 -1.8 972,768 - AO356_04280 0.45 +0.5 972,768 - AO356_04280 0.45 +0.5 972,768 - AO356_04280 0.45 -1.5 972,884 + AO356_04280 0.48 -0.5 972,885 - AO356_04280 0.48 -1.1 973,080 + AO356_04280 0.53 +1.5 973,117 + AO356_04280 0.54 +1.9 973,117 + AO356_04280 0.54 -0.5 973,157 + AO356_04280 0.55 -2.1 973,158 - AO356_04280 0.55 +1.1 973,670 + AO356_04280 0.68 +0.5 973,671 - AO356_04280 0.68 +1.4 973,671 - AO356_04280 0.68 -0.5 973,743 + AO356_04280 0.70 +0.9 973,744 - AO356_04280 0.70 +2.1 973,744 - AO356_04280 0.70 -0.5 973,821 - AO356_04280 0.72 -2.1 973,934 + AO356_04280 0.75 -0.5 973,935 - AO356_04280 0.75 +0.5 973,935 - AO356_04280 0.75 -0.1 973,935 - AO356_04280 0.75 +0.9 973,935 - AO356_04280 0.75 -0.1 974,271 + AO356_04280 0.83 +2.1 974,271 + AO356_04280 0.83 -0.5 974,272 - AO356_04280 0.83 -0.7 974,272 - AO356_04280 0.83 +2.5 974,272 - AO356_04280 0.83 -0.5 974,475 - AO356_04280 0.88 +1.3 974,724 - +1.5 974,931 - +1.2 975,080 - +0.3 975,080 - +0.1 975,080 - -1.1 975,080 - +0.5 975,156 + -0.5 975,176 - -0.9 975,252 + -0.1 975,252 + -1.5 975,252 + +0.5 975,253 - +1.1 975,253 - +0.1 975,253 - +0.7 975,253 - -0.5 975,253 - +0.9 975,253 - +1.5 975,354 + AO356_04285 0.12 +0.3 975,355 - AO356_04285 0.12 +2.4 975,355 - AO356_04285 0.12 +1.1 975,355 - AO356_04285 0.12 +0.1 975,444 + AO356_04285 0.17 +0.5 975,445 - AO356_04285 0.17 +0.9 975,445 - AO356_04285 0.17 +0.5 975,451 - AO356_04285 0.17 +1.1 975,451 - AO356_04285 0.17 +1.3 975,451 - AO356_04285 0.17 -0.0 975,451 - AO356_04285 0.17 -0.8 975,451 - AO356_04285 0.17 +2.0 975,451 - AO356_04285 0.17 -0.5 975,451 - AO356_04285 0.17 -0.5 975,451 - AO356_04285 0.17 +0.1 975,451 - AO356_04285 0.17 -1.5 975,451 - AO356_04285 0.17 -0.5 975,451 - AO356_04285 0.17 -1.1 975,514 + AO356_04285 0.21 -1.1 975,514 + AO356_04285 0.21 -1.2 975,514 + AO356_04285 0.21 -1.3 975,515 - AO356_04285 0.21 +0.5 975,515 - AO356_04285 0.21 +0.8 975,515 - AO356_04285 0.21 +0.0 975,515 - AO356_04285 0.21 +0.7 975,549 + AO356_04285 0.23 -0.3 975,550 - AO356_04285 0.23 +1.3 975,597 + AO356_04285 0.26 +1.5 975,597 + AO356_04285 0.26 +0.3 975,597 + AO356_04285 0.26 -1.0 975,597 + AO356_04285 0.26 +0.1 975,683 + AO356_04285 0.31 +0.6 975,683 + AO356_04285 0.31 -0.0 975,684 - AO356_04285 0.31 +1.0 975,684 - AO356_04285 0.31 +2.3 975,684 - AO356_04285 0.31 +0.5 975,802 - AO356_04285 0.38 +0.7 975,802 - AO356_04285 0.38 +1.1 975,802 - AO356_04285 0.38 +1.5 975,802 - AO356_04285 0.38 +1.1 975,802 - AO356_04285 0.38 +0.1
Or see this region's nucleotide sequence