Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04145 and AO356_04150 are separated by 155 nucleotides AO356_04150 and AO356_04155 are separated by 187 nucleotides AO356_04155 and AO356_04160 are separated by 263 nucleotides AO356_04160 and AO356_04165 are separated by 44 nucleotides
AO356_04145: AO356_04145 - hypothetical protein, at 932,500 to 933,366
_04145
AO356_04150: AO356_04150 - transcriptional regulator, at 933,522 to 933,914
_04150
AO356_04155: AO356_04155 - thioredoxin, at 934,102 to 934,833
_04155
AO356_04160: AO356_04160 - hypothetical protein, at 935,097 to 935,369
_04160
AO356_04165: AO356_04165 - hypothetical protein, at 935,414 to 935,974
_04165
Position (kb) 934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 933.364 kb on + strand at 933.364 kb on + strand at 933.432 kb on - strand at 933.440 kb on + strand at 933.463 kb on + strand at 933.560 kb on + strand at 933.560 kb on + strand at 933.561 kb on - strand at 933.561 kb on - strand at 933.561 kb on - strand at 933.718 kb on + strand, within AO356_04150 at 933.718 kb on + strand, within AO356_04150 at 933.718 kb on + strand, within AO356_04150 at 933.718 kb on + strand, within AO356_04150 at 933.718 kb on + strand, within AO356_04150 at 933.719 kb on - strand, within AO356_04150 at 933.719 kb on - strand, within AO356_04150 at 933.719 kb on - strand, within AO356_04150 at 933.719 kb on - strand, within AO356_04150 at 933.719 kb on - strand, within AO356_04150 at 933.735 kb on + strand, within AO356_04150 at 933.735 kb on + strand, within AO356_04150 at 933.745 kb on + strand, within AO356_04150 at 933.817 kb on + strand, within AO356_04150 at 933.829 kb on + strand, within AO356_04150 at 933.829 kb on + strand, within AO356_04150 at 933.830 kb on - strand, within AO356_04150 at 933.902 kb on + strand at 933.902 kb on + strand at 933.902 kb on + strand at 933.904 kb on + strand at 933.904 kb on + strand at 933.904 kb on + strand at 933.904 kb on + strand at 933.904 kb on + strand at 933.904 kb on + strand at 933.905 kb on - strand at 933.905 kb on - strand at 933.905 kb on - strand at 933.905 kb on - strand at 933.905 kb on - strand at 933.945 kb on + strand at 933.945 kb on + strand at 933.946 kb on - strand at 933.946 kb on - strand at 933.946 kb on - strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.949 kb on + strand at 933.950 kb on - strand at 933.950 kb on - strand at 933.950 kb on - strand at 933.950 kb on - strand at 934.109 kb on + strand at 934.109 kb on + strand at 934.109 kb on + strand at 934.109 kb on + strand at 934.110 kb on - strand at 934.110 kb on - strand at 934.325 kb on - strand, within AO356_04155 at 934.534 kb on + strand, within AO356_04155 at 934.534 kb on + strand, within AO356_04155 at 934.534 kb on + strand, within AO356_04155 at 934.534 kb on + strand, within AO356_04155 at 934.588 kb on + strand, within AO356_04155 at 934.588 kb on + strand, within AO356_04155 at 934.588 kb on + strand, within AO356_04155 at 934.588 kb on + strand, within AO356_04155 at 934.588 kb on + strand, within AO356_04155 at 934.589 kb on - strand, within AO356_04155 at 934.589 kb on - strand, within AO356_04155 at 934.594 kb on + strand, within AO356_04155 at 934.594 kb on + strand, within AO356_04155 at 934.595 kb on - strand, within AO356_04155 at 934.645 kb on + strand, within AO356_04155 at 934.645 kb on + strand, within AO356_04155 at 934.646 kb on - strand, within AO356_04155 at 934.646 kb on - strand, within AO356_04155 at 934.646 kb on - strand, within AO356_04155 at 934.678 kb on + strand, within AO356_04155 at 934.678 kb on + strand, within AO356_04155 at 934.678 kb on + strand, within AO356_04155 at 934.678 kb on + strand, within AO356_04155 at 934.679 kb on - strand, within AO356_04155 at 934.688 kb on - strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.720 kb on + strand, within AO356_04155 at 934.721 kb on - strand, within AO356_04155 at 934.721 kb on - strand, within AO356_04155 at 934.726 kb on + strand, within AO356_04155 at 934.726 kb on + strand, within AO356_04155 at 934.727 kb on - strand, within AO356_04155 at 934.727 kb on - strand, within AO356_04155 at 934.727 kb on - strand, within AO356_04155 at 934.795 kb on + strand at 934.795 kb on + strand at 934.795 kb on + strand at 934.795 kb on + strand at 934.795 kb on + strand at 934.796 kb on - strand at 934.958 kb on - strand at 934.966 kb on + strand at 934.967 kb on - strand at 935.015 kb on + strand at 935.015 kb on + strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.016 kb on - strand at 935.017 kb on + strand at 935.017 kb on + strand at 935.033 kb on - strand at 935.078 kb on - strand at 935.096 kb on + strand at 935.096 kb on + strand at 935.106 kb on + strand at 935.107 kb on - strand at 935.107 kb on - strand at 935.107 kb on - strand at 935.291 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.387 kb on + strand at 935.387 kb on + strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.403 kb on + strand at 935.403 kb on + strand at 935.412 kb on - strand at 935.415 kb on + strand at 935.444 kb on + strand at 935.445 kb on - strand at 935.554 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.688 kb on - strand, within AO356_04165 at 935.691 kb on + strand, within AO356_04165 at 935.692 kb on - strand, within AO356_04165 at 935.692 kb on - strand, within AO356_04165 at 935.722 kb on + strand, within AO356_04165 at 935.723 kb on - strand, within AO356_04165 at 935.724 kb on + strand, within AO356_04165 at 935.724 kb on + strand, within AO356_04165 at 935.725 kb on - strand, within AO356_04165 at 935.725 kb on - strand, within AO356_04165 at 935.748 kb on + strand, within AO356_04165 at 935.748 kb on + strand, within AO356_04165
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 933,364 + +0.2 933,364 + -1.1 933,432 - -1.2 933,440 + +0.4 933,463 + +0.0 933,560 + -0.5 933,560 + -1.0 933,561 - -0.6 933,561 - +0.7 933,561 - +0.4 933,718 + AO356_04150 0.50 +0.0 933,718 + AO356_04150 0.50 +0.9 933,718 + AO356_04150 0.50 +0.4 933,718 + AO356_04150 0.50 -0.0 933,718 + AO356_04150 0.50 -0.5 933,719 - AO356_04150 0.50 -0.2 933,719 - AO356_04150 0.50 +1.5 933,719 - AO356_04150 0.50 -0.5 933,719 - AO356_04150 0.50 -0.7 933,719 - AO356_04150 0.50 +0.5 933,735 + AO356_04150 0.54 -0.5 933,735 + AO356_04150 0.54 +0.5 933,745 + AO356_04150 0.57 +1.3 933,817 + AO356_04150 0.75 -1.5 933,829 + AO356_04150 0.78 +0.8 933,829 + AO356_04150 0.78 -0.5 933,830 - AO356_04150 0.78 +1.3 933,902 + +0.5 933,902 + +0.5 933,902 + -1.3 933,904 + +1.7 933,904 + -0.5 933,904 + -1.7 933,904 + -0.6 933,904 + -2.0 933,904 + -0.7 933,905 - +0.8 933,905 - +0.5 933,905 - -0.5 933,905 - +1.0 933,905 - +1.2 933,945 + +0.4 933,945 + +0.4 933,946 - +1.4 933,946 - -0.6 933,946 - +0.5 933,949 + -0.4 933,949 + +0.7 933,949 + -0.7 933,949 + +1.1 933,949 + -2.0 933,949 + -0.5 933,949 + +0.4 933,949 + -0.5 933,950 - -0.5 933,950 - +0.5 933,950 - -0.1 933,950 - +1.3 934,109 + +0.0 934,109 + +0.0 934,109 + +0.0 934,109 + +0.1 934,110 - -0.5 934,110 - +0.9 934,325 - AO356_04155 0.30 +1.2 934,534 + AO356_04155 0.59 +0.3 934,534 + AO356_04155 0.59 -0.5 934,534 + AO356_04155 0.59 +0.5 934,534 + AO356_04155 0.59 -0.3 934,588 + AO356_04155 0.66 -0.5 934,588 + AO356_04155 0.66 +1.3 934,588 + AO356_04155 0.66 +0.3 934,588 + AO356_04155 0.66 +0.9 934,588 + AO356_04155 0.66 +0.5 934,589 - AO356_04155 0.67 -0.5 934,589 - AO356_04155 0.67 -0.1 934,594 + AO356_04155 0.67 -0.2 934,594 + AO356_04155 0.67 +0.7 934,595 - AO356_04155 0.67 +1.5 934,645 + AO356_04155 0.74 -3.2 934,645 + AO356_04155 0.74 +0.0 934,646 - AO356_04155 0.74 +1.0 934,646 - AO356_04155 0.74 +1.2 934,646 - AO356_04155 0.74 +0.5 934,678 + AO356_04155 0.79 +1.5 934,678 + AO356_04155 0.79 +1.8 934,678 + AO356_04155 0.79 +0.1 934,678 + AO356_04155 0.79 +1.1 934,679 - AO356_04155 0.79 -0.5 934,688 - AO356_04155 0.80 -0.5 934,720 + AO356_04155 0.84 +0.0 934,720 + AO356_04155 0.84 -0.5 934,720 + AO356_04155 0.84 +1.9 934,720 + AO356_04155 0.84 -0.7 934,720 + AO356_04155 0.84 -0.0 934,720 + AO356_04155 0.84 +1.1 934,720 + AO356_04155 0.84 +0.1 934,721 - AO356_04155 0.85 +0.4 934,721 - AO356_04155 0.85 +0.9 934,726 + AO356_04155 0.85 +0.1 934,726 + AO356_04155 0.85 +0.3 934,727 - AO356_04155 0.85 +0.9 934,727 - AO356_04155 0.85 +0.5 934,727 - AO356_04155 0.85 -2.8 934,795 + +0.1 934,795 + -0.2 934,795 + +0.6 934,795 + -1.1 934,795 + +1.1 934,796 - -1.1 934,958 - -0.5 934,966 + +0.1 934,967 - +1.0 935,015 + +0.5 935,015 + +0.3 935,016 - -0.8 935,016 - +0.5 935,016 - +0.7 935,016 - -0.1 935,016 - -1.0 935,016 - +0.9 935,016 - -1.3 935,016 - -0.0 935,017 + +0.9 935,017 + -1.1 935,033 - -0.5 935,078 - +3.5 935,096 + -0.5 935,096 + +0.3 935,106 + +1.1 935,107 - -0.1 935,107 - +0.0 935,107 - -0.5 935,291 - AO356_04160 0.71 -0.1 935,300 - AO356_04160 0.74 -1.7 935,300 - AO356_04160 0.74 +0.5 935,300 - AO356_04160 0.74 -2.1 935,300 - AO356_04160 0.74 -1.5 935,300 - AO356_04160 0.74 -0.1 935,387 + -1.6 935,387 + +0.5 935,388 - +0.1 935,388 - -0.5 935,388 - +1.0 935,388 - -0.3 935,388 - +0.5 935,403 + -0.5 935,403 + +1.3 935,412 - +0.5 935,415 + -1.1 935,444 + -1.1 935,445 - +0.3 935,554 + AO356_04165 0.25 -0.5 935,687 + AO356_04165 0.49 -1.3 935,687 + AO356_04165 0.49 -1.5 935,687 + AO356_04165 0.49 +0.5 935,688 - AO356_04165 0.49 +1.3 935,691 + AO356_04165 0.49 -1.0 935,692 - AO356_04165 0.50 +1.8 935,692 - AO356_04165 0.50 +0.9 935,722 + AO356_04165 0.55 +0.4 935,723 - AO356_04165 0.55 +1.3 935,724 + AO356_04165 0.55 -0.5 935,724 + AO356_04165 0.55 +0.5 935,725 - AO356_04165 0.55 -0.3 935,725 - AO356_04165 0.55 +0.8 935,748 + AO356_04165 0.60 -1.2 935,748 + AO356_04165 0.60 +1.5
Or see this region's nucleotide sequence