Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03350

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03345 and AO356_03350 are separated by 114 nucleotidesAO356_03350 and AO356_03355 are separated by 4 nucleotidesAO356_03355 and AO356_03360 are separated by 14 nucleotides AO356_03345: AO356_03345 - hypothetical protein, at 743,542 to 745,536 _03345 AO356_03350: AO356_03350 - glycosyl transferase, at 745,651 to 746,667 _03350 AO356_03355: AO356_03355 - hypothetical protein, at 746,672 to 747,628 _03355 AO356_03360: AO356_03360 - hypothetical protein, at 747,643 to 748,884 _03360 Position (kb) 745 746 747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 744.685 kb on + strand, within AO356_03345at 744.817 kb on + strand, within AO356_03345at 744.817 kb on + strand, within AO356_03345at 744.817 kb on + strand, within AO356_03345at 744.818 kb on - strand, within AO356_03345at 744.907 kb on - strand, within AO356_03345at 744.915 kb on - strand, within AO356_03345at 744.915 kb on - strand, within AO356_03345at 744.951 kb on + strand, within AO356_03345at 744.951 kb on + strand, within AO356_03345at 744.951 kb on + strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 744.952 kb on - strand, within AO356_03345at 745.040 kb on + strand, within AO356_03345at 745.041 kb on - strand, within AO356_03345at 745.041 kb on - strand, within AO356_03345at 745.044 kb on + strand, within AO356_03345at 745.044 kb on + strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.045 kb on - strand, within AO356_03345at 745.078 kb on - strand, within AO356_03345at 745.175 kb on + strand, within AO356_03345at 745.179 kb on + strand, within AO356_03345at 745.179 kb on + strand, within AO356_03345at 745.188 kb on + strand, within AO356_03345at 745.209 kb on + strand, within AO356_03345at 745.209 kb on + strand, within AO356_03345at 745.221 kb on - strand, within AO356_03345at 745.226 kb on + strand, within AO356_03345at 745.226 kb on + strand, within AO356_03345at 745.227 kb on - strand, within AO356_03345at 745.319 kb on + strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.320 kb on - strand, within AO356_03345at 745.341 kb on + strandat 745.341 kb on + strandat 745.483 kb on - strandat 745.536 kb on + strandat 745.537 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.596 kb on - strandat 745.622 kb on - strandat 745.709 kb on + strandat 745.710 kb on - strandat 745.718 kb on - strandat 745.720 kb on + strandat 745.720 kb on + strandat 745.875 kb on - strand, within AO356_03350at 745.881 kb on + strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.882 kb on - strand, within AO356_03350at 745.892 kb on - strand, within AO356_03350at 745.911 kb on + strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.912 kb on - strand, within AO356_03350at 745.969 kb on - strand, within AO356_03350at 746.050 kb on - strand, within AO356_03350at 746.098 kb on + strand, within AO356_03350at 746.101 kb on + strand, within AO356_03350at 746.102 kb on - strand, within AO356_03350at 746.219 kb on + strand, within AO356_03350at 746.226 kb on + strand, within AO356_03350at 746.226 kb on + strand, within AO356_03350at 746.227 kb on - strand, within AO356_03350at 746.227 kb on - strand, within AO356_03350at 746.243 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.460 kb on + strand, within AO356_03350at 746.497 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.509 kb on + strand, within AO356_03350at 746.510 kb on - strand, within AO356_03350at 746.705 kb on - strandat 746.705 kb on - strandat 746.705 kb on - strandat 746.705 kb on - strandat 746.706 kb on + strandat 746.706 kb on + strandat 746.706 kb on + strandat 746.707 kb on - strandat 746.837 kb on + strand, within AO356_03355at 746.838 kb on - strand, within AO356_03355at 746.875 kb on - strand, within AO356_03355at 746.990 kb on - strand, within AO356_03355at 746.992 kb on + strand, within AO356_03355at 746.993 kb on - strand, within AO356_03355at 747.093 kb on - strand, within AO356_03355at 747.418 kb on + strand, within AO356_03355at 747.440 kb on + strand, within AO356_03355at 747.464 kb on + strand, within AO356_03355at 747.504 kb on + strand, within AO356_03355at 747.505 kb on - strand, within AO356_03355at 747.542 kb on + strandat 747.543 kb on - strandat 747.543 kb on - strandat 747.552 kb on - strandat 747.581 kb on - strandat 747.597 kb on - strandat 747.600 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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744,685 + AO356_03345 0.57 -0.5
744,817 + AO356_03345 0.64 +0.9
744,817 + AO356_03345 0.64 -0.8
744,817 + AO356_03345 0.64 +0.1
744,818 - AO356_03345 0.64 +0.5
744,907 - AO356_03345 0.68 +0.1
744,915 - AO356_03345 0.69 -0.8
744,915 - AO356_03345 0.69 -1.5
744,951 + AO356_03345 0.71 +0.5
744,951 + AO356_03345 0.71 +1.5
744,951 + AO356_03345 0.71 -0.9
744,952 - AO356_03345 0.71 +1.1
744,952 - AO356_03345 0.71 +0.5
744,952 - AO356_03345 0.71 -0.5
744,952 - AO356_03345 0.71 +1.6
744,952 - AO356_03345 0.71 +1.1
744,952 - AO356_03345 0.71 -1.1
745,040 + AO356_03345 0.75 +2.7
745,041 - AO356_03345 0.75 +0.3
745,041 - AO356_03345 0.75 +0.8
745,044 + AO356_03345 0.75 +2.0
745,044 + AO356_03345 0.75 -1.0
745,045 - AO356_03345 0.75 +0.2
745,045 - AO356_03345 0.75 -1.5
745,045 - AO356_03345 0.75 +0.3
745,045 - AO356_03345 0.75 +1.7
745,078 - AO356_03345 0.77 +0.2
745,175 + AO356_03345 0.82 +0.4
745,179 + AO356_03345 0.82 -1.3
745,179 + AO356_03345 0.82 +1.8
745,188 + AO356_03345 0.83 -1.4
745,209 + AO356_03345 0.84 -1.1
745,209 + AO356_03345 0.84 -0.5
745,221 - AO356_03345 0.84 +0.2
745,226 + AO356_03345 0.84 +0.3
745,226 + AO356_03345 0.84 -0.5
745,227 - AO356_03345 0.84 +0.2
745,319 + AO356_03345 0.89 -0.9
745,320 - AO356_03345 0.89 +0.8
745,320 - AO356_03345 0.89 -0.5
745,320 - AO356_03345 0.89 -2.1
745,320 - AO356_03345 0.89 -1.5
745,320 - AO356_03345 0.89 -2.1
745,341 + -0.5
745,341 + -1.0
745,483 - +0.8
745,536 + -1.8
745,537 - -0.5
745,596 - +0.1
745,596 - -0.5
745,596 - -1.5
745,596 - +0.2
745,596 - +0.9
745,622 - -2.1
745,709 + -1.1
745,710 - -0.5
745,718 - -3.1
745,720 + -1.1
745,720 + +0.5
745,875 - AO356_03350 0.22 -0.5
745,881 + AO356_03350 0.23 +0.7
745,882 - AO356_03350 0.23 -2.1
745,882 - AO356_03350 0.23 -2.8
745,882 - AO356_03350 0.23 -1.5
745,892 - AO356_03350 0.24 -0.5
745,911 + AO356_03350 0.26 -0.2
745,912 - AO356_03350 0.26 -0.2
745,912 - AO356_03350 0.26 +1.1
745,912 - AO356_03350 0.26 -2.1
745,969 - AO356_03350 0.31 -1.1
746,050 - AO356_03350 0.39 -1.1
746,098 + AO356_03350 0.44 -2.1
746,101 + AO356_03350 0.44 -2.5
746,102 - AO356_03350 0.44 -0.5
746,219 + AO356_03350 0.56 -2.0
746,226 + AO356_03350 0.57 +1.1
746,226 + AO356_03350 0.57 -2.1
746,227 - AO356_03350 0.57 -1.5
746,227 - AO356_03350 0.57 -3.1
746,243 + AO356_03350 0.58 -0.8
746,460 + AO356_03350 0.80 -0.1
746,460 + AO356_03350 0.80 -1.2
746,460 + AO356_03350 0.80 +1.2
746,460 + AO356_03350 0.80 +0.5
746,460 + AO356_03350 0.80 -1.1
746,497 + AO356_03350 0.83 -0.5
746,509 + AO356_03350 0.84 -0.1
746,509 + AO356_03350 0.84 -0.2
746,509 + AO356_03350 0.84 -1.6
746,510 - AO356_03350 0.84 -2.8
746,705 - +0.6
746,705 - -0.6
746,705 - +0.1
746,705 - +1.1
746,706 + -0.2
746,706 + -0.3
746,706 + -0.9
746,707 - -0.0
746,837 + AO356_03355 0.17 -0.1
746,838 - AO356_03355 0.17 +0.1
746,875 - AO356_03355 0.21 -1.5
746,990 - AO356_03355 0.33 +0.2
746,992 + AO356_03355 0.33 -0.5
746,993 - AO356_03355 0.34 -0.5
747,093 - AO356_03355 0.44 -1.2
747,418 + AO356_03355 0.78 -0.6
747,440 + AO356_03355 0.80 +0.5
747,464 + AO356_03355 0.83 +0.2
747,504 + AO356_03355 0.87 +0.5
747,505 - AO356_03355 0.87 -0.0
747,542 + -1.2
747,543 - -0.5
747,543 - +0.4
747,552 - -0.5
747,581 - +1.5
747,597 - +1.4
747,600 + +0.5

Or see this region's nucleotide sequence