Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03300 and AO356_03305 are separated by 191 nucleotides AO356_03305 and AO356_03310 are separated by 204 nucleotides AO356_03310 and AO356_03315 are separated by 10 nucleotides
AO356_03300: AO356_03300 - histidine kinase, at 730,424 to 733,075
_03300
AO356_03305: AO356_03305 - ATPase, at 733,267 to 733,812
_03305
AO356_03310: AO356_03310 - potassium-transporting ATPase subunit B, at 734,017 to 736,071
_03310
AO356_03315: AO356_03315 - ATPase, at 736,082 to 737,776
_03315
Position (kb) 734
735
736
737 Strain fitness (log2 ratio) -1
0
1
2
3 at 733.097 kb on + strand at 733.098 kb on - strand at 733.098 kb on - strand at 733.143 kb on + strand at 733.144 kb on - strand at 733.144 kb on - strand at 733.269 kb on - strand at 733.561 kb on - strand, within AO356_03305 at 733.745 kb on + strand, within AO356_03305 at 733.777 kb on + strand at 733.778 kb on - strand at 733.778 kb on - strand at 734.046 kb on + strand at 734.046 kb on + strand at 734.047 kb on - strand at 734.047 kb on - strand at 734.047 kb on - strand at 734.096 kb on + strand at 734.096 kb on + strand at 734.096 kb on + strand at 734.096 kb on + strand at 734.096 kb on + strand at 734.096 kb on + strand at 734.096 kb on + strand at 734.097 kb on - strand at 734.097 kb on - strand at 734.271 kb on - strand, within AO356_03310 at 734.271 kb on - strand, within AO356_03310 at 734.271 kb on - strand, within AO356_03310 at 734.306 kb on + strand, within AO356_03310 at 734.306 kb on + strand, within AO356_03310 at 734.560 kb on - strand, within AO356_03310 at 734.883 kb on + strand, within AO356_03310 at 734.884 kb on - strand, within AO356_03310 at 734.888 kb on + strand, within AO356_03310 at 734.888 kb on + strand, within AO356_03310 at 734.888 kb on + strand, within AO356_03310 at 734.889 kb on - strand, within AO356_03310 at 734.903 kb on + strand, within AO356_03310 at 734.903 kb on + strand, within AO356_03310 at 734.904 kb on - strand, within AO356_03310 at 734.996 kb on + strand, within AO356_03310 at 734.996 kb on + strand, within AO356_03310 at 735.092 kb on + strand, within AO356_03310 at 735.092 kb on + strand, within AO356_03310 at 735.093 kb on - strand, within AO356_03310 at 735.102 kb on + strand, within AO356_03310 at 735.102 kb on + strand, within AO356_03310 at 735.493 kb on + strand, within AO356_03310 at 735.493 kb on + strand, within AO356_03310 at 735.494 kb on - strand, within AO356_03310 at 735.874 kb on - strand at 736.065 kb on + strand at 736.065 kb on + strand at 736.065 kb on + strand at 736.066 kb on - strand at 736.066 kb on - strand at 736.066 kb on - strand at 736.066 kb on - strand at 736.066 kb on - strand at 736.279 kb on - strand, within AO356_03315 at 736.386 kb on + strand, within AO356_03315 at 736.387 kb on - strand, within AO356_03315 at 736.387 kb on - strand, within AO356_03315 at 736.392 kb on + strand, within AO356_03315 at 736.392 kb on + strand, within AO356_03315 at 736.392 kb on + strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.393 kb on - strand, within AO356_03315 at 736.623 kb on + strand, within AO356_03315 at 736.858 kb on - strand, within AO356_03315 at 736.948 kb on - strand, within AO356_03315 at 736.948 kb on - strand, within AO356_03315 at 736.948 kb on - strand, within AO356_03315
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 733,097 + +1.5 733,098 - +1.1 733,098 - +0.5 733,143 + +0.5 733,144 - -0.5 733,144 - +0.5 733,269 - +0.8 733,561 - AO356_03305 0.54 +0.5 733,745 + AO356_03305 0.88 +1.1 733,777 + +0.3 733,778 - +0.5 733,778 - +1.5 734,046 + +1.3 734,046 + +1.5 734,047 - +2.3 734,047 - -0.1 734,047 - -0.5 734,096 + +0.2 734,096 + -0.5 734,096 + +0.1 734,096 + +3.0 734,096 + +1.8 734,096 + +1.1 734,096 + +2.7 734,097 - +0.5 734,097 - -0.0 734,271 - AO356_03310 0.12 -0.0 734,271 - AO356_03310 0.12 +0.8 734,271 - AO356_03310 0.12 -0.5 734,306 + AO356_03310 0.14 +1.5 734,306 + AO356_03310 0.14 -0.5 734,560 - AO356_03310 0.26 +0.5 734,883 + AO356_03310 0.42 +2.1 734,884 - AO356_03310 0.42 -0.5 734,888 + AO356_03310 0.42 +0.1 734,888 + AO356_03310 0.42 +1.9 734,888 + AO356_03310 0.42 +0.5 734,889 - AO356_03310 0.42 -0.5 734,903 + AO356_03310 0.43 -0.5 734,903 + AO356_03310 0.43 +1.1 734,904 - AO356_03310 0.43 +1.1 734,996 + AO356_03310 0.48 +0.5 734,996 + AO356_03310 0.48 +1.8 735,092 + AO356_03310 0.52 +2.1 735,092 + AO356_03310 0.52 +2.0 735,093 - AO356_03310 0.52 +2.3 735,102 + AO356_03310 0.53 +1.3 735,102 + AO356_03310 0.53 +1.4 735,493 + AO356_03310 0.72 +1.8 735,493 + AO356_03310 0.72 +0.2 735,494 - AO356_03310 0.72 +0.1 735,874 - -0.3 736,065 + -0.3 736,065 + -0.5 736,065 + -0.2 736,066 - +1.1 736,066 - +0.5 736,066 - -0.5 736,066 - +0.8 736,066 - +3.4 736,279 - AO356_03315 0.12 -1.5 736,386 + AO356_03315 0.18 +1.1 736,387 - AO356_03315 0.18 +0.2 736,387 - AO356_03315 0.18 -1.5 736,392 + AO356_03315 0.18 +1.2 736,392 + AO356_03315 0.18 -0.5 736,392 + AO356_03315 0.18 +0.1 736,393 - AO356_03315 0.18 +2.3 736,393 - AO356_03315 0.18 +1.1 736,393 - AO356_03315 0.18 -0.9 736,393 - AO356_03315 0.18 +0.2 736,393 - AO356_03315 0.18 +0.5 736,393 - AO356_03315 0.18 -0.5 736,393 - AO356_03315 0.18 +0.1 736,393 - AO356_03315 0.18 +0.9 736,623 + AO356_03315 0.32 -1.5 736,858 - AO356_03315 0.46 +1.1 736,948 - AO356_03315 0.51 -0.5 736,948 - AO356_03315 0.51 -0.5 736,948 - AO356_03315 0.51 +2.1
Or see this region's nucleotide sequence