Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03220

Experiment: KB-half, Pseudo5 supernatant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03215 and AO356_03220 are separated by 252 nucleotidesAO356_03220 and AO356_03225 are separated by 56 nucleotidesAO356_03225 and AO356_03230 are separated by 10 nucleotides AO356_03215: AO356_03215 - hypothetical protein, at 714,292 to 715,263 _03215 AO356_03220: AO356_03220 - hypothetical protein, at 715,516 to 715,809 _03220 AO356_03225: AO356_03225 - esterase, at 715,866 to 716,471 _03225 AO356_03230: AO356_03230 - ABC transporter, at 716,482 to 717,165 _03230 Position (kb) 715 716Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 714.525 kb on - strand, within AO356_03215at 714.554 kb on + strand, within AO356_03215at 714.555 kb on - strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.613 kb on + strand, within AO356_03215at 714.614 kb on - strand, within AO356_03215at 714.614 kb on - strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.905 kb on + strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.906 kb on - strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.932 kb on + strand, within AO356_03215at 714.933 kb on - strand, within AO356_03215at 714.933 kb on - strand, within AO356_03215at 714.933 kb on - strand, within AO356_03215at 714.935 kb on + strand, within AO356_03215at 714.935 kb on + strand, within AO356_03215at 714.936 kb on - strand, within AO356_03215at 715.077 kb on - strand, within AO356_03215at 715.077 kb on - strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.088 kb on + strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.089 kb on - strand, within AO356_03215at 715.121 kb on + strand, within AO356_03215at 715.121 kb on + strand, within AO356_03215at 715.122 kb on - strand, within AO356_03215at 715.296 kb on - strandat 715.312 kb on + strandat 715.312 kb on + strandat 715.312 kb on + strandat 715.313 kb on - strandat 715.313 kb on - strandat 715.313 kb on - strandat 715.328 kb on - strandat 715.427 kb on + strandat 715.427 kb on + strandat 715.427 kb on + strandat 715.428 kb on - strandat 715.517 kb on + strandat 715.517 kb on + strandat 715.518 kb on - strandat 715.518 kb on - strandat 715.856 kb on + strandat 715.881 kb on + strandat 716.029 kb on + strand, within AO356_03225at 716.029 kb on + strand, within AO356_03225at 716.029 kb on + strand, within AO356_03225at 716.030 kb on - strand, within AO356_03225at 716.053 kb on + strand, within AO356_03225at 716.054 kb on - strand, within AO356_03225at 716.065 kb on + strand, within AO356_03225at 716.066 kb on - strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.381 kb on + strand, within AO356_03225at 716.382 kb on - strand, within AO356_03225at 716.382 kb on - strand, within AO356_03225at 716.382 kb on - strand, within AO356_03225at 716.384 kb on + strand, within AO356_03225at 716.385 kb on - strand, within AO356_03225at 716.385 kb on - strand, within AO356_03225at 716.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant
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714,525 - AO356_03215 0.24 -0.8
714,554 + AO356_03215 0.27 +1.1
714,555 - AO356_03215 0.27 -0.5
714,613 + AO356_03215 0.33 +2.2
714,613 + AO356_03215 0.33 -2.1
714,613 + AO356_03215 0.33 -0.5
714,613 + AO356_03215 0.33 +0.5
714,613 + AO356_03215 0.33 +1.5
714,614 - AO356_03215 0.33 +0.3
714,614 - AO356_03215 0.33 +0.8
714,905 + AO356_03215 0.63 -0.5
714,905 + AO356_03215 0.63 -0.0
714,905 + AO356_03215 0.63 +0.5
714,905 + AO356_03215 0.63 +0.1
714,905 + AO356_03215 0.63 -0.0
714,906 - AO356_03215 0.63 -2.8
714,906 - AO356_03215 0.63 +1.5
714,906 - AO356_03215 0.63 +0.1
714,906 - AO356_03215 0.63 +0.9
714,906 - AO356_03215 0.63 -1.5
714,906 - AO356_03215 0.63 -0.5
714,932 + AO356_03215 0.66 -0.5
714,932 + AO356_03215 0.66 +2.1
714,932 + AO356_03215 0.66 -0.8
714,932 + AO356_03215 0.66 +1.5
714,932 + AO356_03215 0.66 +0.5
714,933 - AO356_03215 0.66 -0.9
714,933 - AO356_03215 0.66 +0.5
714,933 - AO356_03215 0.66 -2.5
714,935 + AO356_03215 0.66 +1.5
714,935 + AO356_03215 0.66 -0.5
714,936 - AO356_03215 0.66 +0.3
715,077 - AO356_03215 0.81 +0.2
715,077 - AO356_03215 0.81 +1.1
715,088 + AO356_03215 0.82 +0.5
715,088 + AO356_03215 0.82 +0.5
715,088 + AO356_03215 0.82 -0.5
715,088 + AO356_03215 0.82 -0.2
715,088 + AO356_03215 0.82 -0.5
715,088 + AO356_03215 0.82 +0.5
715,088 + AO356_03215 0.82 +1.1
715,088 + AO356_03215 0.82 +0.7
715,088 + AO356_03215 0.82 -0.5
715,088 + AO356_03215 0.82 -2.1
715,089 - AO356_03215 0.82 -0.5
715,089 - AO356_03215 0.82 -0.5
715,089 - AO356_03215 0.82 -0.8
715,089 - AO356_03215 0.82 +1.1
715,089 - AO356_03215 0.82 +0.3
715,089 - AO356_03215 0.82 +0.5
715,121 + AO356_03215 0.85 -0.5
715,121 + AO356_03215 0.85 -0.5
715,122 - AO356_03215 0.85 -1.1
715,296 - +1.1
715,312 + +0.1
715,312 + -0.5
715,312 + +1.8
715,313 - +0.5
715,313 - +0.1
715,313 - +1.3
715,328 - +0.5
715,427 + -1.2
715,427 + -0.5
715,427 + +0.9
715,428 - -0.1
715,517 + +1.1
715,517 + -0.5
715,518 - -0.5
715,518 - +0.1
715,856 + -0.2
715,881 + -0.5
716,029 + AO356_03225 0.27 -0.5
716,029 + AO356_03225 0.27 +1.1
716,029 + AO356_03225 0.27 -1.5
716,030 - AO356_03225 0.27 +0.5
716,053 + AO356_03225 0.31 -0.1
716,054 - AO356_03225 0.31 +2.5
716,065 + AO356_03225 0.33 +0.3
716,066 - AO356_03225 0.33 -1.5
716,381 + AO356_03225 0.85 +0.5
716,381 + AO356_03225 0.85 -1.2
716,381 + AO356_03225 0.85 -0.5
716,381 + AO356_03225 0.85 +1.1
716,382 - AO356_03225 0.85 -0.5
716,382 - AO356_03225 0.85 -0.5
716,382 - AO356_03225 0.85 -0.8
716,384 + AO356_03225 0.85 -1.1
716,385 - AO356_03225 0.86 +1.4
716,385 - AO356_03225 0.86 +1.8
716,515 - -0.5

Or see this region's nucleotide sequence