Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02455 and AO356_02460 are separated by 11 nucleotides AO356_02460 and AO356_02465 are separated by 178 nucleotides
AO356_02455: AO356_02455 - (Fe-S)-binding protein, at 532,932 to 534,347
_02455
AO356_02460: AO356_02460 - hypothetical protein, at 534,359 to 534,898
_02460
AO356_02465: AO356_02465 - carbonate dehydratase, at 535,077 to 537,527
_02465
Position (kb) 534
535 Strain fitness (log2 ratio) -2
-1
0
1 at 533.562 kb on + strand, within AO356_02455 at 533.562 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.601 kb on + strand, within AO356_02455 at 533.602 kb on - strand, within AO356_02455 at 533.602 kb on - strand, within AO356_02455 at 533.602 kb on - strand, within AO356_02455 at 533.664 kb on + strand, within AO356_02455 at 533.664 kb on + strand, within AO356_02455 at 533.715 kb on + strand, within AO356_02455 at 533.715 kb on + strand, within AO356_02455 at 533.716 kb on - strand, within AO356_02455 at 533.889 kb on + strand, within AO356_02455 at 533.889 kb on + strand, within AO356_02455 at 533.889 kb on + strand, within AO356_02455 at 534.048 kb on + strand, within AO356_02455 at 534.084 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.122 kb on + strand, within AO356_02455 at 534.123 kb on - strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.126 kb on + strand, within AO356_02455 at 534.127 kb on - strand, within AO356_02455 at 534.127 kb on - strand, within AO356_02455 at 534.204 kb on + strand, within AO356_02455 at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.301 kb on + strand at 534.389 kb on + strand at 534.503 kb on + strand, within AO356_02460 at 534.504 kb on - strand, within AO356_02460 at 534.504 kb on - strand, within AO356_02460 at 534.896 kb on + strand at 534.896 kb on + strand at 534.896 kb on + strand at 534.988 kb on + strand at 535.033 kb on + strand at 535.855 kb on - strand, within AO356_02465
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 533,562 + AO356_02455 0.44 -1.7 533,562 + AO356_02455 0.44 -0.7 533,601 + AO356_02455 0.47 -0.7 533,601 + AO356_02455 0.47 +1.6 533,601 + AO356_02455 0.47 +0.9 533,601 + AO356_02455 0.47 +0.3 533,601 + AO356_02455 0.47 +0.3 533,601 + AO356_02455 0.47 -0.7 533,601 + AO356_02455 0.47 +0.3 533,602 - AO356_02455 0.47 -1.7 533,602 - AO356_02455 0.47 -0.7 533,602 - AO356_02455 0.47 -0.3 533,664 + AO356_02455 0.52 +0.9 533,664 + AO356_02455 0.52 -0.1 533,715 + AO356_02455 0.55 +1.0 533,715 + AO356_02455 0.55 +0.6 533,716 - AO356_02455 0.55 -0.7 533,889 + AO356_02455 0.68 -1.7 533,889 + AO356_02455 0.68 -0.7 533,889 + AO356_02455 0.68 +0.3 534,048 + AO356_02455 0.79 +0.3 534,084 + AO356_02455 0.81 -0.7 534,122 + AO356_02455 0.84 -0.7 534,122 + AO356_02455 0.84 +0.3 534,122 + AO356_02455 0.84 -1.7 534,122 + AO356_02455 0.84 +0.2 534,122 + AO356_02455 0.84 +0.3 534,122 + AO356_02455 0.84 +0.3 534,123 - AO356_02455 0.84 -1.7 534,126 + AO356_02455 0.84 +1.6 534,126 + AO356_02455 0.84 +1.3 534,126 + AO356_02455 0.84 -0.7 534,126 + AO356_02455 0.84 +0.6 534,126 + AO356_02455 0.84 -2.7 534,126 + AO356_02455 0.84 -0.1 534,126 + AO356_02455 0.84 +0.9 534,127 - AO356_02455 0.84 -0.7 534,127 - AO356_02455 0.84 -0.7 534,204 + AO356_02455 0.90 +1.1 534,301 + -1.5 534,301 + +0.3 534,301 + +0.3 534,301 + -0.3 534,301 + +1.6 534,301 + +1.6 534,389 + +0.3 534,503 + AO356_02460 0.27 -0.7 534,504 - AO356_02460 0.27 -1.3 534,504 - AO356_02460 0.27 +0.3 534,896 + -2.3 534,896 + +0.3 534,896 + +0.9 534,988 + -0.4 535,033 + -1.7 535,855 - AO356_02465 0.32 -0.7
Or see this region's nucleotide sequence