Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00965 and AO356_00970 are separated by 55 nucleotides AO356_00970 and AO356_00975 are separated by 133 nucleotides AO356_00975 and AO356_00980 are separated by 204 nucleotides
AO356_00965: AO356_00965 - sugar ABC transporter ATP-binding protein, at 219,124 to 220,677
_00965
AO356_00970: AO356_00970 - LacI family transcriptional regulator, at 220,733 to 221,692
_00970
AO356_00975: AO356_00975 - hypothetical protein, at 221,826 to 222,278
_00975
AO356_00980: AO356_00980 - DNA damage resistance protein <small>(from data)</small>, at 222,483 to 222,782
_00980
Position (kb) 220
221
222 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 219.983 kb on + strand, within AO356_00965 at 220.079 kb on + strand, within AO356_00965 at 220.080 kb on - strand, within AO356_00965 at 220.366 kb on + strand, within AO356_00965 at 220.366 kb on + strand, within AO356_00965 at 220.367 kb on - strand, within AO356_00965 at 220.464 kb on - strand, within AO356_00965 at 220.622 kb on + strand at 220.622 kb on + strand at 220.622 kb on + strand at 220.623 kb on - strand at 220.623 kb on - strand at 220.677 kb on + strand at 220.677 kb on + strand at 220.677 kb on + strand at 220.677 kb on + strand at 220.677 kb on + strand at 220.678 kb on - strand at 220.678 kb on - strand at 220.678 kb on - strand at 220.678 kb on - strand at 220.678 kb on - strand at 220.678 kb on - strand at 220.934 kb on + strand, within AO356_00970 at 220.934 kb on + strand, within AO356_00970 at 220.935 kb on - strand, within AO356_00970 at 220.935 kb on - strand, within AO356_00970 at 220.935 kb on - strand, within AO356_00970 at 221.026 kb on - strand, within AO356_00970 at 221.159 kb on - strand, within AO356_00970 at 221.220 kb on + strand, within AO356_00970 at 221.262 kb on - strand, within AO356_00970 at 221.270 kb on + strand, within AO356_00970 at 221.517 kb on + strand, within AO356_00970 at 221.518 kb on - strand, within AO356_00970 at 221.518 kb on - strand, within AO356_00970 at 221.624 kb on - strand at 221.709 kb on + strand at 221.709 kb on + strand at 221.710 kb on - strand at 221.715 kb on + strand at 221.715 kb on + strand at 221.716 kb on - strand at 221.770 kb on + strand at 221.771 kb on - strand at 221.771 kb on - strand at 221.771 kb on - strand at 221.775 kb on + strand at 221.837 kb on + strand at 221.837 kb on + strand at 221.838 kb on - strand at 221.977 kb on + strand, within AO356_00975 at 222.161 kb on + strand, within AO356_00975 at 222.305 kb on + strand at 222.305 kb on + strand at 222.306 kb on - strand at 222.393 kb on + strand at 222.394 kb on - strand at 222.472 kb on + strand at 222.472 kb on + strand at 222.472 kb on + strand at 222.473 kb on - strand at 222.473 kb on - strand at 222.480 kb on + strand at 222.498 kb on + strand at 222.519 kb on - strand, within AO356_00980 at 222.528 kb on - strand, within AO356_00980 at 222.565 kb on + strand, within AO356_00980 at 222.566 kb on - strand, within AO356_00980 at 222.566 kb on - strand, within AO356_00980 at 222.566 kb on - strand, within AO356_00980 at 222.574 kb on - strand, within AO356_00980 at 222.574 kb on - strand, within AO356_00980 at 222.574 kb on - strand, within AO356_00980 at 222.575 kb on + strand, within AO356_00980 at 222.575 kb on + strand, within AO356_00980 at 222.576 kb on - strand, within AO356_00980
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 219,983 + AO356_00965 0.55 +0.4 220,079 + AO356_00965 0.61 +0.1 220,080 - AO356_00965 0.62 +0.5 220,366 + AO356_00965 0.80 +0.4 220,366 + AO356_00965 0.80 +0.1 220,367 - AO356_00965 0.80 +1.1 220,464 - AO356_00965 0.86 -0.9 220,622 + -1.5 220,622 + +0.7 220,622 + -0.9 220,623 - -1.9 220,623 - +2.1 220,677 + +0.6 220,677 + -1.9 220,677 + -0.2 220,677 + +0.5 220,677 + +2.1 220,678 - +0.3 220,678 - +0.8 220,678 - -0.9 220,678 - +1.0 220,678 - -0.9 220,678 - -1.9 220,934 + AO356_00970 0.21 -0.9 220,934 + AO356_00970 0.21 -1.6 220,935 - AO356_00970 0.21 -0.9 220,935 - AO356_00970 0.21 +0.7 220,935 - AO356_00970 0.21 -0.3 221,026 - AO356_00970 0.31 -0.9 221,159 - AO356_00970 0.44 +0.4 221,220 + AO356_00970 0.51 -0.8 221,262 - AO356_00970 0.55 -2.5 221,270 + AO356_00970 0.56 -0.1 221,517 + AO356_00970 0.82 -0.9 221,518 - AO356_00970 0.82 -0.9 221,518 - AO356_00970 0.82 +1.6 221,624 - -0.9 221,709 + -0.9 221,709 + -0.9 221,710 - +0.7 221,715 + -0.5 221,715 + -1.2 221,716 - +1.1 221,770 + +2.4 221,771 - -0.9 221,771 - +0.4 221,771 - +1.1 221,775 + -0.3 221,837 + +1.9 221,837 + +1.4 221,838 - +0.7 221,977 + AO356_00975 0.33 -0.0 222,161 + AO356_00975 0.74 +0.1 222,305 + -0.6 222,305 + -0.9 222,306 - +0.4 222,393 + -2.1 222,394 - +1.2 222,472 + +1.9 222,472 + +1.0 222,472 + -0.9 222,473 - +1.4 222,473 - -0.2 222,480 + -0.3 222,498 + +0.5 222,519 - AO356_00980 0.12 -1.1 222,528 - AO356_00980 0.15 -1.9 222,565 + AO356_00980 0.27 -0.9 222,566 - AO356_00980 0.28 +3.2 222,566 - AO356_00980 0.28 +0.4 222,566 - AO356_00980 0.28 +1.7 222,574 - AO356_00980 0.30 +1.1 222,574 - AO356_00980 0.30 -0.0 222,574 - AO356_00980 0.30 +1.1 222,575 + AO356_00980 0.31 +0.6 222,575 + AO356_00980 0.31 -0.1 222,576 - AO356_00980 0.31 +0.9
Or see this region's nucleotide sequence