Experiment: KB-half, Pseudo5 supernatant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00790 and AO356_00795 overlap by 11 nucleotides AO356_00795 and AO356_00800 overlap by 4 nucleotides
AO356_00790: AO356_00790 - epimerase, at 178,344 to 179,441
_00790
AO356_00795: AO356_00795 - 4Fe-4S ferredoxin, at 179,431 to 181,017
_00795
AO356_00800: AO356_00800 - UDP-N-acetylglucosamine 2-epimerase, at 181,014 to 182,123
_00800
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -1
0
1
2
3 at 178.491 kb on + strand, within AO356_00790 at 178.492 kb on - strand, within AO356_00790 at 178.492 kb on - strand, within AO356_00790 at 178.547 kb on - strand, within AO356_00790 at 178.547 kb on - strand, within AO356_00790 at 179.052 kb on + strand, within AO356_00790 at 179.924 kb on - strand, within AO356_00795 at 180.140 kb on - strand, within AO356_00795 at 180.175 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.742 kb on + strand, within AO356_00795 at 180.897 kb on + strand at 180.897 kb on + strand at 180.898 kb on - strand at 181.027 kb on + strand at 181.028 kb on - strand at 181.100 kb on + strand at 181.101 kb on - strand at 181.288 kb on + strand, within AO356_00800 at 181.288 kb on + strand, within AO356_00800 at 181.341 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.716 kb on + strand, within AO356_00800 at 181.817 kb on + strand, within AO356_00800 at 181.818 kb on - strand, within AO356_00800 at 181.839 kb on + strand, within AO356_00800 at 181.840 kb on - strand, within AO356_00800
Per-strain Table
Position Strand Gene LocusTag Fraction KB-half, Pseudo5 supernatant remove 178,491 + AO356_00790 0.13 +0.8 178,492 - AO356_00790 0.13 +0.2 178,492 - AO356_00790 0.13 -1.2 178,547 - AO356_00790 0.18 +1.8 178,547 - AO356_00790 0.18 +2.8 179,052 + AO356_00790 0.64 +0.6 179,924 - AO356_00795 0.31 -0.1 180,140 - AO356_00795 0.45 -0.8 180,175 + AO356_00795 0.47 +0.7 180,559 + AO356_00795 0.71 +0.4 180,559 + AO356_00795 0.71 -0.8 180,560 - AO356_00795 0.71 +0.6 180,560 - AO356_00795 0.71 +0.0 180,742 + AO356_00795 0.83 -1.0 180,897 + +0.9 180,897 + +0.6 180,898 - +2.4 181,027 + +0.2 181,028 - +0.9 181,100 + +1.0 181,101 - +0.4 181,288 + AO356_00800 0.25 +0.2 181,288 + AO356_00800 0.25 +0.3 181,341 + AO356_00800 0.29 -0.1 181,661 + AO356_00800 0.58 +0.5 181,661 + AO356_00800 0.58 -0.6 181,716 + AO356_00800 0.63 -0.7 181,817 + AO356_00800 0.72 -0.0 181,818 - AO356_00800 0.72 -0.4 181,839 + AO356_00800 0.74 +0.8 181,840 - AO356_00800 0.74 +0.2
Or see this region's nucleotide sequence