Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20410 and ABZR87_RS20415 are separated by 63 nucleotides ABZR87_RS20415 and ABZR87_RS20420 are separated by 2 nucleotides ABZR87_RS20420 and ABZR87_RS20425 are separated by 68 nucleotides
ABZR87_RS20410: ABZR87_RS20410 - EamA family transporter, at 967,521 to 968,408
_RS20410
ABZR87_RS20415: ABZR87_RS20415 - type II TA system antitoxin MqsA family protein, at 968,472 to 968,873
_RS20415
ABZR87_RS20420: ABZR87_RS20420 - type II toxin-antitoxin system MqsR family toxin, at 968,876 to 969,178
_RS20420
ABZR87_RS20425: ABZR87_RS20425 - EAL domain-containing protein, at 969,247 to 971,259
_RS20425
Position (kb) 968
969 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 967.489 kb on + strand at 967.489 kb on + strand at 967.489 kb on + strand at 967.490 kb on - strand at 967.557 kb on + strand at 967.557 kb on + strand at 967.558 kb on - strand at 967.558 kb on - strand at 967.558 kb on - strand at 967.558 kb on - strand at 967.558 kb on - strand at 967.578 kb on + strand at 967.578 kb on + strand at 967.578 kb on + strand at 967.578 kb on + strand at 967.579 kb on - strand at 967.579 kb on - strand at 967.579 kb on - strand at 967.579 kb on - strand at 967.888 kb on - strand, within ABZR87_RS20410 at 967.888 kb on - strand, within ABZR87_RS20410 at 968.062 kb on + strand, within ABZR87_RS20410 at 968.062 kb on + strand, within ABZR87_RS20410 at 968.205 kb on + strand, within ABZR87_RS20410 at 968.205 kb on + strand, within ABZR87_RS20410 at 968.205 kb on + strand, within ABZR87_RS20410 at 968.205 kb on + strand, within ABZR87_RS20410 at 968.205 kb on + strand, within ABZR87_RS20410 at 968.206 kb on - strand, within ABZR87_RS20410 at 968.206 kb on - strand, within ABZR87_RS20410 at 968.206 kb on - strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.250 kb on + strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.251 kb on - strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.256 kb on + strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.257 kb on - strand, within ABZR87_RS20410 at 968.569 kb on + strand, within ABZR87_RS20415 at 968.570 kb on - strand, within ABZR87_RS20415 at 968.570 kb on - strand, within ABZR87_RS20415 at 968.657 kb on - strand, within ABZR87_RS20415 at 968.671 kb on + strand, within ABZR87_RS20415 at 968.672 kb on - strand, within ABZR87_RS20415 at 968.809 kb on + strand, within ABZR87_RS20415 at 968.810 kb on - strand, within ABZR87_RS20415 at 968.810 kb on - strand, within ABZR87_RS20415 at 968.815 kb on + strand, within ABZR87_RS20415 at 968.816 kb on - strand, within ABZR87_RS20415 at 968.816 kb on - strand, within ABZR87_RS20415 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.961 kb on + strand, within ABZR87_RS20420 at 968.962 kb on - strand, within ABZR87_RS20420 at 968.962 kb on - strand, within ABZR87_RS20420 at 969.009 kb on + strand, within ABZR87_RS20420 at 969.009 kb on + strand, within ABZR87_RS20420 at 969.010 kb on - strand, within ABZR87_RS20420 at 969.010 kb on - strand, within ABZR87_RS20420 at 969.065 kb on - strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.090 kb on + strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.091 kb on - strand, within ABZR87_RS20420 at 969.110 kb on + strand, within ABZR87_RS20420 at 969.164 kb on - strand at 969.164 kb on - strand at 969.202 kb on + strand at 969.205 kb on - strand at 969.211 kb on + strand at 969.211 kb on + strand at 969.211 kb on + strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.212 kb on - strand at 969.248 kb on + strand at 969.249 kb on - strand at 969.390 kb on - strand at 969.587 kb on + strand, within ABZR87_RS20425 at 969.588 kb on - strand, within ABZR87_RS20425 at 969.602 kb on + strand, within ABZR87_RS20425
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 967,489 + -0.2 967,489 + -0.4 967,489 + +0.1 967,490 - +0.4 967,557 + -0.1 967,557 + -0.8 967,558 - -1.6 967,558 - -1.8 967,558 - -0.9 967,558 - +0.6 967,558 - -2.1 967,578 + -0.5 967,578 + +0.5 967,578 + +0.9 967,578 + +1.2 967,579 - +0.2 967,579 - +0.1 967,579 - +1.8 967,579 - -0.2 967,888 - ABZR87_RS20410 0.41 +0.5 967,888 - ABZR87_RS20410 0.41 +1.4 968,062 + ABZR87_RS20410 0.61 -0.4 968,062 + ABZR87_RS20410 0.61 -0.6 968,205 + ABZR87_RS20410 0.77 +0.2 968,205 + ABZR87_RS20410 0.77 +0.5 968,205 + ABZR87_RS20410 0.77 -0.7 968,205 + ABZR87_RS20410 0.77 +0.2 968,205 + ABZR87_RS20410 0.77 -0.3 968,206 - ABZR87_RS20410 0.77 +0.4 968,206 - ABZR87_RS20410 0.77 +0.4 968,206 - ABZR87_RS20410 0.77 +0.5 968,250 + ABZR87_RS20410 0.82 -1.8 968,250 + ABZR87_RS20410 0.82 +0.2 968,250 + ABZR87_RS20410 0.82 -2.0 968,250 + ABZR87_RS20410 0.82 +1.3 968,250 + ABZR87_RS20410 0.82 +1.4 968,250 + ABZR87_RS20410 0.82 -0.2 968,250 + ABZR87_RS20410 0.82 -0.4 968,251 - ABZR87_RS20410 0.82 -0.2 968,251 - ABZR87_RS20410 0.82 +0.2 968,251 - ABZR87_RS20410 0.82 +0.5 968,256 + ABZR87_RS20410 0.83 -0.5 968,256 + ABZR87_RS20410 0.83 -1.0 968,256 + ABZR87_RS20410 0.83 -0.9 968,256 + ABZR87_RS20410 0.83 -0.2 968,257 - ABZR87_RS20410 0.83 -0.8 968,257 - ABZR87_RS20410 0.83 -1.8 968,257 - ABZR87_RS20410 0.83 -0.7 968,257 - ABZR87_RS20410 0.83 +1.1 968,257 - ABZR87_RS20410 0.83 +0.3 968,257 - ABZR87_RS20410 0.83 -0.1 968,257 - ABZR87_RS20410 0.83 -0.5 968,569 + ABZR87_RS20415 0.24 -0.7 968,570 - ABZR87_RS20415 0.24 +0.4 968,570 - ABZR87_RS20415 0.24 -0.4 968,657 - ABZR87_RS20415 0.46 -0.1 968,671 + ABZR87_RS20415 0.50 +0.3 968,672 - ABZR87_RS20415 0.50 -0.3 968,809 + ABZR87_RS20415 0.84 -0.3 968,810 - ABZR87_RS20415 0.84 +0.9 968,810 - ABZR87_RS20415 0.84 -0.1 968,815 + ABZR87_RS20415 0.85 +0.2 968,816 - ABZR87_RS20415 0.86 +1.0 968,816 - ABZR87_RS20415 0.86 +0.1 968,961 + ABZR87_RS20420 0.28 -0.4 968,961 + ABZR87_RS20420 0.28 +0.1 968,961 + ABZR87_RS20420 0.28 +0.6 968,962 - ABZR87_RS20420 0.28 +0.4 968,962 - ABZR87_RS20420 0.28 +0.2 969,009 + ABZR87_RS20420 0.44 -0.7 969,009 + ABZR87_RS20420 0.44 +0.1 969,010 - ABZR87_RS20420 0.44 -1.2 969,010 - ABZR87_RS20420 0.44 +0.2 969,065 - ABZR87_RS20420 0.62 -0.5 969,090 + ABZR87_RS20420 0.71 +0.0 969,090 + ABZR87_RS20420 0.71 -1.2 969,090 + ABZR87_RS20420 0.71 +0.8 969,090 + ABZR87_RS20420 0.71 -2.8 969,090 + ABZR87_RS20420 0.71 -0.2 969,091 - ABZR87_RS20420 0.71 +0.7 969,091 - ABZR87_RS20420 0.71 +0.4 969,091 - ABZR87_RS20420 0.71 +1.6 969,110 + ABZR87_RS20420 0.77 +0.3 969,164 - -0.0 969,164 - +1.6 969,202 + +0.7 969,205 - -1.2 969,211 + +2.2 969,211 + +0.5 969,211 + -0.7 969,212 - +0.5 969,212 - -0.3 969,212 - +0.6 969,212 - -1.5 969,212 - +1.2 969,248 + +1.0 969,249 - +0.9 969,390 - -0.5 969,587 + ABZR87_RS20425 0.17 -0.1 969,588 - ABZR87_RS20425 0.17 -0.5 969,602 + ABZR87_RS20425 0.18 +0.2
Or see this region's nucleotide sequence