Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18795

Experiment: rhizosphere sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18790 and ABZR87_RS18795 are separated by 90 nucleotidesABZR87_RS18795 and ABZR87_RS18800 are separated by 12 nucleotides ABZR87_RS18790: ABZR87_RS18790 - LysR family transcriptional regulator, at 567,760 to 568,707 _RS18790 ABZR87_RS18795: ABZR87_RS18795 - MDR family MFS transporter, at 568,798 to 570,390 _RS18795 ABZR87_RS18800: ABZR87_RS18800 - oxygenase MpaB family protein, at 570,403 to 571,299 _RS18800 Position (kb) 568 569 570 571Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.958 kb on - strand, within ABZR87_RS18790at 567.958 kb on - strand, within ABZR87_RS18790at 567.958 kb on - strand, within ABZR87_RS18790at 568.175 kb on - strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.438 kb on + strand, within ABZR87_RS18790at 568.438 kb on + strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.546 kb on + strand, within ABZR87_RS18790at 568.546 kb on + strand, within ABZR87_RS18790at 568.546 kb on + strand, within ABZR87_RS18790at 568.547 kb on - strand, within ABZR87_RS18790at 568.547 kb on - strand, within ABZR87_RS18790at 568.578 kb on - strand, within ABZR87_RS18790at 568.675 kb on + strandat 568.733 kb on + strandat 568.733 kb on + strandat 568.733 kb on + strandat 568.734 kb on - strandat 569.050 kb on + strand, within ABZR87_RS18795at 569.051 kb on - strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.104 kb on + strand, within ABZR87_RS18795at 569.104 kb on + strand, within ABZR87_RS18795at 569.294 kb on - strand, within ABZR87_RS18795at 569.302 kb on + strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.356 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.588 kb on + strand, within ABZR87_RS18795at 569.589 kb on - strand, within ABZR87_RS18795at 569.878 kb on + strand, within ABZR87_RS18795at 569.878 kb on + strand, within ABZR87_RS18795at 569.879 kb on - strand, within ABZR87_RS18795at 570.388 kb on + strandat 570.388 kb on + strandat 570.389 kb on - strandat 570.404 kb on + strandat 570.707 kb on + strand, within ABZR87_RS18800at 570.707 kb on + strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.708 kb on - strand, within ABZR87_RS18800at 570.785 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.824 kb on + strand, within ABZR87_RS18800at 570.825 kb on - strand, within ABZR87_RS18800at 570.825 kb on - strand, within ABZR87_RS18800at 570.825 kb on - strand, within ABZR87_RS18800at 570.833 kb on + strand, within ABZR87_RS18800at 570.833 kb on + strand, within ABZR87_RS18800at 570.833 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.992 kb on + strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800at 570.993 kb on - strand, within ABZR87_RS18800

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB
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567,955 + ABZR87_RS18790 0.21 +0.2
567,955 + ABZR87_RS18790 0.21 +1.1
567,955 + ABZR87_RS18790 0.21 -0.0
567,955 + ABZR87_RS18790 0.21 +0.1
567,955 + ABZR87_RS18790 0.21 -0.7
567,955 + ABZR87_RS18790 0.21 -0.9
567,955 + ABZR87_RS18790 0.21 +0.8
567,955 + ABZR87_RS18790 0.21 +0.3
567,955 + ABZR87_RS18790 0.21 -0.1
567,955 + ABZR87_RS18790 0.21 +2.0
567,956 - ABZR87_RS18790 0.21 -1.1
567,956 - ABZR87_RS18790 0.21 -0.1
567,956 - ABZR87_RS18790 0.21 +0.5
567,956 - ABZR87_RS18790 0.21 -2.0
567,956 - ABZR87_RS18790 0.21 -0.1
567,956 - ABZR87_RS18790 0.21 +1.6
567,956 - ABZR87_RS18790 0.21 +0.0
567,957 + ABZR87_RS18790 0.21 +0.2
567,957 + ABZR87_RS18790 0.21 -0.7
567,957 + ABZR87_RS18790 0.21 +1.8
567,957 + ABZR87_RS18790 0.21 +0.3
567,957 + ABZR87_RS18790 0.21 -1.2
567,958 - ABZR87_RS18790 0.21 -0.6
567,958 - ABZR87_RS18790 0.21 +0.7
567,958 - ABZR87_RS18790 0.21 -2.1
568,175 - ABZR87_RS18790 0.44 -0.1
568,408 + ABZR87_RS18790 0.68 +0.2
568,408 + ABZR87_RS18790 0.68 +0.2
568,408 + ABZR87_RS18790 0.68 -0.4
568,408 + ABZR87_RS18790 0.68 -0.1
568,409 - ABZR87_RS18790 0.68 +0.4
568,409 - ABZR87_RS18790 0.68 -0.4
568,409 - ABZR87_RS18790 0.68 +0.3
568,409 - ABZR87_RS18790 0.68 +0.9
568,409 - ABZR87_RS18790 0.68 +0.1
568,409 - ABZR87_RS18790 0.68 +1.6
568,409 - ABZR87_RS18790 0.68 +0.7
568,438 + ABZR87_RS18790 0.72 -0.2
568,438 + ABZR87_RS18790 0.72 +1.0
568,439 - ABZR87_RS18790 0.72 +0.1
568,439 - ABZR87_RS18790 0.72 -0.7
568,439 - ABZR87_RS18790 0.72 -0.1
568,439 - ABZR87_RS18790 0.72 -2.2
568,546 + ABZR87_RS18790 0.83 -0.9
568,546 + ABZR87_RS18790 0.83 +1.1
568,546 + ABZR87_RS18790 0.83 -0.6
568,547 - ABZR87_RS18790 0.83 -0.0
568,547 - ABZR87_RS18790 0.83 +0.4
568,578 - ABZR87_RS18790 0.86 +1.6
568,675 + +0.6
568,733 + -0.1
568,733 + -1.7
568,733 + -0.7
568,734 - -0.3
569,050 + ABZR87_RS18795 0.16 -0.6
569,051 - ABZR87_RS18795 0.16 +0.8
569,083 + ABZR87_RS18795 0.18 -1.0
569,083 + ABZR87_RS18795 0.18 -0.3
569,083 + ABZR87_RS18795 0.18 -0.2
569,083 + ABZR87_RS18795 0.18 -1.6
569,084 - ABZR87_RS18795 0.18 +0.6
569,084 - ABZR87_RS18795 0.18 +0.2
569,084 - ABZR87_RS18795 0.18 -1.1
569,084 - ABZR87_RS18795 0.18 -0.1
569,084 - ABZR87_RS18795 0.18 +0.3
569,084 - ABZR87_RS18795 0.18 +0.9
569,104 + ABZR87_RS18795 0.19 +0.6
569,104 + ABZR87_RS18795 0.19 -0.5
569,294 - ABZR87_RS18795 0.31 +1.0
569,302 + ABZR87_RS18795 0.32 +0.6
569,303 - ABZR87_RS18795 0.32 +0.3
569,303 - ABZR87_RS18795 0.32 +0.0
569,303 - ABZR87_RS18795 0.32 +0.3
569,303 - ABZR87_RS18795 0.32 +0.6
569,303 - ABZR87_RS18795 0.32 -0.1
569,356 + ABZR87_RS18795 0.35 -1.0
569,368 + ABZR87_RS18795 0.36 +0.3
569,368 + ABZR87_RS18795 0.36 -0.4
569,368 + ABZR87_RS18795 0.36 -0.2
569,368 + ABZR87_RS18795 0.36 +0.5
569,368 + ABZR87_RS18795 0.36 +0.4
569,369 - ABZR87_RS18795 0.36 +0.8
569,369 - ABZR87_RS18795 0.36 +0.2
569,369 - ABZR87_RS18795 0.36 -0.1
569,369 - ABZR87_RS18795 0.36 +0.3
569,369 - ABZR87_RS18795 0.36 +1.8
569,369 - ABZR87_RS18795 0.36 -0.7
569,369 - ABZR87_RS18795 0.36 -0.5
569,369 - ABZR87_RS18795 0.36 +0.9
569,369 - ABZR87_RS18795 0.36 +0.4
569,369 - ABZR87_RS18795 0.36 +0.3
569,369 - ABZR87_RS18795 0.36 -0.4
569,369 - ABZR87_RS18795 0.36 -1.6
569,582 + ABZR87_RS18795 0.49 -0.0
569,582 + ABZR87_RS18795 0.49 -0.2
569,582 + ABZR87_RS18795 0.49 +0.0
569,582 + ABZR87_RS18795 0.49 -0.7
569,582 + ABZR87_RS18795 0.49 +0.4
569,582 + ABZR87_RS18795 0.49 -0.2
569,582 + ABZR87_RS18795 0.49 -0.8
569,582 + ABZR87_RS18795 0.49 +4.5
569,582 + ABZR87_RS18795 0.49 +0.3
569,583 - ABZR87_RS18795 0.49 -0.0
569,583 - ABZR87_RS18795 0.49 -0.2
569,583 - ABZR87_RS18795 0.49 -0.9
569,583 - ABZR87_RS18795 0.49 -0.1
569,588 + ABZR87_RS18795 0.50 +0.4
569,589 - ABZR87_RS18795 0.50 -1.3
569,878 + ABZR87_RS18795 0.68 -0.8
569,878 + ABZR87_RS18795 0.68 +1.0
569,879 - ABZR87_RS18795 0.68 -0.9
570,388 + +0.0
570,388 + +0.2
570,389 - -0.1
570,404 + -0.1
570,707 + ABZR87_RS18800 0.34 -0.4
570,707 + ABZR87_RS18800 0.34 -0.4
570,708 - ABZR87_RS18800 0.34 +0.9
570,708 - ABZR87_RS18800 0.34 +0.3
570,708 - ABZR87_RS18800 0.34 +0.4
570,708 - ABZR87_RS18800 0.34 -0.9
570,785 + ABZR87_RS18800 0.43 +1.1
570,824 + ABZR87_RS18800 0.47 -0.9
570,824 + ABZR87_RS18800 0.47 -0.8
570,824 + ABZR87_RS18800 0.47 -0.5
570,824 + ABZR87_RS18800 0.47 +0.0
570,825 - ABZR87_RS18800 0.47 -1.5
570,825 - ABZR87_RS18800 0.47 -0.5
570,825 - ABZR87_RS18800 0.47 +0.5
570,833 + ABZR87_RS18800 0.48 +1.2
570,833 + ABZR87_RS18800 0.48 -1.3
570,833 + ABZR87_RS18800 0.48 +0.2
570,992 + ABZR87_RS18800 0.66 +0.1
570,992 + ABZR87_RS18800 0.66 -0.2
570,992 + ABZR87_RS18800 0.66 -0.4
570,992 + ABZR87_RS18800 0.66 -0.3
570,992 + ABZR87_RS18800 0.66 -0.1
570,992 + ABZR87_RS18800 0.66 -1.9
570,993 - ABZR87_RS18800 0.66 -0.0
570,993 - ABZR87_RS18800 0.66 +0.9
570,993 - ABZR87_RS18800 0.66 +2.0
570,993 - ABZR87_RS18800 0.66 +0.4

Or see this region's nucleotide sequence