Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18790

Experiment: rhizosphere sample 6; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18780 and ABZR87_RS18785 are separated by 144 nucleotidesABZR87_RS18785 and ABZR87_RS18790 are separated by 127 nucleotidesABZR87_RS18790 and ABZR87_RS18795 are separated by 90 nucleotides ABZR87_RS18780: ABZR87_RS18780 - hypothetical protein, at 566,715 to 566,861 _RS18780 ABZR87_RS18785: ABZR87_RS18785 - FMN-dependent NADH-azoreductase, at 567,006 to 567,632 _RS18785 ABZR87_RS18790: ABZR87_RS18790 - LysR family transcriptional regulator, at 567,760 to 568,707 _RS18790 ABZR87_RS18795: ABZR87_RS18795 - MDR family MFS transporter, at 568,798 to 570,390 _RS18795 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 566.859 kb on + strandat 566.859 kb on + strandat 566.859 kb on + strandat 566.860 kb on - strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.027 kb on + strandat 567.028 kb on - strandat 567.028 kb on - strandat 567.028 kb on - strandat 567.108 kb on + strand, within ABZR87_RS18785at 567.108 kb on + strand, within ABZR87_RS18785at 567.109 kb on - strand, within ABZR87_RS18785at 567.158 kb on - strand, within ABZR87_RS18785at 567.158 kb on - strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.199 kb on + strand, within ABZR87_RS18785at 567.200 kb on - strand, within ABZR87_RS18785at 567.200 kb on - strand, within ABZR87_RS18785at 567.200 kb on - strand, within ABZR87_RS18785at 567.200 kb on - strand, within ABZR87_RS18785at 567.200 kb on - strand, within ABZR87_RS18785at 567.200 kb on - strand, within ABZR87_RS18785at 567.203 kb on + strand, within ABZR87_RS18785at 567.203 kb on + strand, within ABZR87_RS18785at 567.204 kb on - strand, within ABZR87_RS18785at 567.204 kb on - strand, within ABZR87_RS18785at 567.204 kb on - strand, within ABZR87_RS18785at 567.271 kb on + strand, within ABZR87_RS18785at 567.271 kb on + strand, within ABZR87_RS18785at 567.272 kb on - strand, within ABZR87_RS18785at 567.272 kb on - strand, within ABZR87_RS18785at 567.272 kb on - strand, within ABZR87_RS18785at 567.343 kb on + strand, within ABZR87_RS18785at 567.343 kb on + strand, within ABZR87_RS18785at 567.344 kb on - strand, within ABZR87_RS18785at 567.344 kb on - strand, within ABZR87_RS18785at 567.670 kb on + strandat 567.671 kb on - strandat 567.671 kb on - strandat 567.722 kb on - strandat 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.955 kb on + strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.956 kb on - strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.957 kb on + strand, within ABZR87_RS18790at 567.958 kb on - strand, within ABZR87_RS18790at 567.958 kb on - strand, within ABZR87_RS18790at 567.958 kb on - strand, within ABZR87_RS18790at 568.175 kb on - strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.408 kb on + strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.409 kb on - strand, within ABZR87_RS18790at 568.438 kb on + strand, within ABZR87_RS18790at 568.438 kb on + strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.439 kb on - strand, within ABZR87_RS18790at 568.546 kb on + strand, within ABZR87_RS18790at 568.546 kb on + strand, within ABZR87_RS18790at 568.546 kb on + strand, within ABZR87_RS18790at 568.547 kb on - strand, within ABZR87_RS18790at 568.547 kb on - strand, within ABZR87_RS18790at 568.578 kb on - strand, within ABZR87_RS18790at 568.675 kb on + strandat 568.733 kb on + strandat 568.733 kb on + strandat 568.733 kb on + strandat 568.734 kb on - strandat 569.050 kb on + strand, within ABZR87_RS18795at 569.051 kb on - strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.083 kb on + strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.084 kb on - strand, within ABZR87_RS18795at 569.104 kb on + strand, within ABZR87_RS18795at 569.104 kb on + strand, within ABZR87_RS18795at 569.294 kb on - strand, within ABZR87_RS18795at 569.302 kb on + strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.303 kb on - strand, within ABZR87_RS18795at 569.356 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.368 kb on + strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.369 kb on - strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.582 kb on + strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.583 kb on - strand, within ABZR87_RS18795at 569.588 kb on + strand, within ABZR87_RS18795at 569.589 kb on - strand, within ABZR87_RS18795

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB
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566,859 + -1.3
566,859 + -0.6
566,859 + -0.5
566,860 - +1.2
567,027 + -2.7
567,027 + +0.7
567,027 + -1.8
567,027 + +0.4
567,027 + +0.8
567,027 + -0.5
567,028 - -1.0
567,028 - +0.1
567,028 - -1.2
567,108 + ABZR87_RS18785 0.16 +0.4
567,108 + ABZR87_RS18785 0.16 +0.1
567,109 - ABZR87_RS18785 0.16 -0.6
567,158 - ABZR87_RS18785 0.24 +0.4
567,158 - ABZR87_RS18785 0.24 +0.2
567,199 + ABZR87_RS18785 0.31 -0.9
567,199 + ABZR87_RS18785 0.31 -0.6
567,199 + ABZR87_RS18785 0.31 +2.1
567,199 + ABZR87_RS18785 0.31 +0.7
567,199 + ABZR87_RS18785 0.31 +1.1
567,199 + ABZR87_RS18785 0.31 +1.5
567,199 + ABZR87_RS18785 0.31 -0.4
567,199 + ABZR87_RS18785 0.31 +0.1
567,199 + ABZR87_RS18785 0.31 -0.4
567,200 - ABZR87_RS18785 0.31 +0.2
567,200 - ABZR87_RS18785 0.31 +0.9
567,200 - ABZR87_RS18785 0.31 -0.7
567,200 - ABZR87_RS18785 0.31 -0.1
567,200 - ABZR87_RS18785 0.31 +0.1
567,200 - ABZR87_RS18785 0.31 +0.3
567,203 + ABZR87_RS18785 0.31 +0.3
567,203 + ABZR87_RS18785 0.31 -0.3
567,204 - ABZR87_RS18785 0.32 -0.5
567,204 - ABZR87_RS18785 0.32 +0.3
567,204 - ABZR87_RS18785 0.32 +0.1
567,271 + ABZR87_RS18785 0.42 +0.8
567,271 + ABZR87_RS18785 0.42 -0.4
567,272 - ABZR87_RS18785 0.42 +1.8
567,272 - ABZR87_RS18785 0.42 -0.0
567,272 - ABZR87_RS18785 0.42 -0.9
567,343 + ABZR87_RS18785 0.54 +2.1
567,343 + ABZR87_RS18785 0.54 -0.1
567,344 - ABZR87_RS18785 0.54 -0.7
567,344 - ABZR87_RS18785 0.54 -0.3
567,670 + +0.4
567,671 - -0.5
567,671 - +1.4
567,722 - +0.2
567,955 + ABZR87_RS18790 0.21 +0.2
567,955 + ABZR87_RS18790 0.21 +1.1
567,955 + ABZR87_RS18790 0.21 -0.0
567,955 + ABZR87_RS18790 0.21 +0.1
567,955 + ABZR87_RS18790 0.21 -0.7
567,955 + ABZR87_RS18790 0.21 -0.9
567,955 + ABZR87_RS18790 0.21 +0.8
567,955 + ABZR87_RS18790 0.21 +0.3
567,955 + ABZR87_RS18790 0.21 -0.1
567,955 + ABZR87_RS18790 0.21 +2.0
567,956 - ABZR87_RS18790 0.21 -1.1
567,956 - ABZR87_RS18790 0.21 -0.1
567,956 - ABZR87_RS18790 0.21 +0.5
567,956 - ABZR87_RS18790 0.21 -2.0
567,956 - ABZR87_RS18790 0.21 -0.1
567,956 - ABZR87_RS18790 0.21 +1.6
567,956 - ABZR87_RS18790 0.21 +0.0
567,957 + ABZR87_RS18790 0.21 +0.2
567,957 + ABZR87_RS18790 0.21 -0.7
567,957 + ABZR87_RS18790 0.21 +1.8
567,957 + ABZR87_RS18790 0.21 +0.3
567,957 + ABZR87_RS18790 0.21 -1.2
567,958 - ABZR87_RS18790 0.21 -0.6
567,958 - ABZR87_RS18790 0.21 +0.7
567,958 - ABZR87_RS18790 0.21 -2.1
568,175 - ABZR87_RS18790 0.44 -0.1
568,408 + ABZR87_RS18790 0.68 +0.2
568,408 + ABZR87_RS18790 0.68 +0.2
568,408 + ABZR87_RS18790 0.68 -0.4
568,408 + ABZR87_RS18790 0.68 -0.1
568,409 - ABZR87_RS18790 0.68 +0.4
568,409 - ABZR87_RS18790 0.68 -0.4
568,409 - ABZR87_RS18790 0.68 +0.3
568,409 - ABZR87_RS18790 0.68 +0.9
568,409 - ABZR87_RS18790 0.68 +0.1
568,409 - ABZR87_RS18790 0.68 +1.6
568,409 - ABZR87_RS18790 0.68 +0.7
568,438 + ABZR87_RS18790 0.72 -0.2
568,438 + ABZR87_RS18790 0.72 +1.0
568,439 - ABZR87_RS18790 0.72 +0.1
568,439 - ABZR87_RS18790 0.72 -0.7
568,439 - ABZR87_RS18790 0.72 -0.1
568,439 - ABZR87_RS18790 0.72 -2.2
568,546 + ABZR87_RS18790 0.83 -0.9
568,546 + ABZR87_RS18790 0.83 +1.1
568,546 + ABZR87_RS18790 0.83 -0.6
568,547 - ABZR87_RS18790 0.83 -0.0
568,547 - ABZR87_RS18790 0.83 +0.4
568,578 - ABZR87_RS18790 0.86 +1.6
568,675 + +0.6
568,733 + -0.1
568,733 + -1.7
568,733 + -0.7
568,734 - -0.3
569,050 + ABZR87_RS18795 0.16 -0.6
569,051 - ABZR87_RS18795 0.16 +0.8
569,083 + ABZR87_RS18795 0.18 -1.0
569,083 + ABZR87_RS18795 0.18 -0.3
569,083 + ABZR87_RS18795 0.18 -0.2
569,083 + ABZR87_RS18795 0.18 -1.6
569,084 - ABZR87_RS18795 0.18 +0.6
569,084 - ABZR87_RS18795 0.18 +0.2
569,084 - ABZR87_RS18795 0.18 -1.1
569,084 - ABZR87_RS18795 0.18 -0.1
569,084 - ABZR87_RS18795 0.18 +0.3
569,084 - ABZR87_RS18795 0.18 +0.9
569,104 + ABZR87_RS18795 0.19 +0.6
569,104 + ABZR87_RS18795 0.19 -0.5
569,294 - ABZR87_RS18795 0.31 +1.0
569,302 + ABZR87_RS18795 0.32 +0.6
569,303 - ABZR87_RS18795 0.32 +0.3
569,303 - ABZR87_RS18795 0.32 +0.0
569,303 - ABZR87_RS18795 0.32 +0.3
569,303 - ABZR87_RS18795 0.32 +0.6
569,303 - ABZR87_RS18795 0.32 -0.1
569,356 + ABZR87_RS18795 0.35 -1.0
569,368 + ABZR87_RS18795 0.36 +0.3
569,368 + ABZR87_RS18795 0.36 -0.4
569,368 + ABZR87_RS18795 0.36 -0.2
569,368 + ABZR87_RS18795 0.36 +0.5
569,368 + ABZR87_RS18795 0.36 +0.4
569,369 - ABZR87_RS18795 0.36 +0.8
569,369 - ABZR87_RS18795 0.36 +0.2
569,369 - ABZR87_RS18795 0.36 -0.1
569,369 - ABZR87_RS18795 0.36 +0.3
569,369 - ABZR87_RS18795 0.36 +1.8
569,369 - ABZR87_RS18795 0.36 -0.7
569,369 - ABZR87_RS18795 0.36 -0.5
569,369 - ABZR87_RS18795 0.36 +0.9
569,369 - ABZR87_RS18795 0.36 +0.4
569,369 - ABZR87_RS18795 0.36 +0.3
569,369 - ABZR87_RS18795 0.36 -0.4
569,369 - ABZR87_RS18795 0.36 -1.6
569,582 + ABZR87_RS18795 0.49 -0.0
569,582 + ABZR87_RS18795 0.49 -0.2
569,582 + ABZR87_RS18795 0.49 +0.0
569,582 + ABZR87_RS18795 0.49 -0.7
569,582 + ABZR87_RS18795 0.49 +0.4
569,582 + ABZR87_RS18795 0.49 -0.2
569,582 + ABZR87_RS18795 0.49 -0.8
569,582 + ABZR87_RS18795 0.49 +4.5
569,582 + ABZR87_RS18795 0.49 +0.3
569,583 - ABZR87_RS18795 0.49 -0.0
569,583 - ABZR87_RS18795 0.49 -0.2
569,583 - ABZR87_RS18795 0.49 -0.9
569,583 - ABZR87_RS18795 0.49 -0.1
569,588 + ABZR87_RS18795 0.50 +0.4
569,589 - ABZR87_RS18795 0.50 -1.3

Or see this region's nucleotide sequence