Experiment: rhizosphere sample 6; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17825 and ABZR87_RS17830 overlap by 4 nucleotides ABZR87_RS17830 and ABZR87_RS17835 overlap by 23 nucleotides ABZR87_RS17835 and ABZR87_RS17840 overlap by 4 nucleotides
ABZR87_RS17825: ABZR87_RS17825 - F390 synthetase-related protein, at 357,830 to 359,140
_RS17825
ABZR87_RS17830: ABZR87_RS17830 - MBL fold metallo-hydrolase, at 359,137 to 359,943
_RS17830
ABZR87_RS17835: ABZR87_RS17835 - NAD(P)-dependent oxidoreductase, at 359,921 to 360,934
_RS17835
ABZR87_RS17840: ABZR87_RS17840 - 3-oxoacyl-[acyl-carrier-protein] synthase III C-terminal domain-containing protein, at 360,931 to 361,929
_RS17840
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.005 kb on - strand, within ABZR87_RS17825 at 359.110 kb on - strand at 359.219 kb on + strand, within ABZR87_RS17830 at 359.219 kb on + strand, within ABZR87_RS17830 at 359.219 kb on + strand, within ABZR87_RS17830 at 359.220 kb on - strand, within ABZR87_RS17830 at 359.279 kb on + strand, within ABZR87_RS17830 at 359.280 kb on - strand, within ABZR87_RS17830 at 359.727 kb on - strand, within ABZR87_RS17830 at 359.748 kb on - strand, within ABZR87_RS17830 at 359.901 kb on + strand at 359.901 kb on + strand at 359.902 kb on - strand at 360.004 kb on - strand at 360.049 kb on - strand, within ABZR87_RS17835 at 360.168 kb on + strand, within ABZR87_RS17835 at 360.246 kb on + strand, within ABZR87_RS17835 at 360.312 kb on + strand, within ABZR87_RS17835 at 360.312 kb on + strand, within ABZR87_RS17835 at 360.312 kb on + strand, within ABZR87_RS17835 at 360.313 kb on - strand, within ABZR87_RS17835 at 360.313 kb on - strand, within ABZR87_RS17835 at 360.516 kb on + strand, within ABZR87_RS17835 at 360.516 kb on + strand, within ABZR87_RS17835 at 360.517 kb on - strand, within ABZR87_RS17835 at 360.543 kb on + strand, within ABZR87_RS17835 at 360.543 kb on + strand, within ABZR87_RS17835 at 360.573 kb on + strand, within ABZR87_RS17835 at 360.573 kb on + strand, within ABZR87_RS17835 at 360.574 kb on - strand, within ABZR87_RS17835 at 360.582 kb on + strand, within ABZR87_RS17835 at 360.582 kb on + strand, within ABZR87_RS17835 at 360.582 kb on + strand, within ABZR87_RS17835 at 360.583 kb on - strand, within ABZR87_RS17835 at 360.601 kb on + strand, within ABZR87_RS17835 at 360.601 kb on + strand, within ABZR87_RS17835 at 360.602 kb on - strand, within ABZR87_RS17835 at 360.676 kb on - strand, within ABZR87_RS17835 at 360.687 kb on + strand, within ABZR87_RS17835 at 360.687 kb on + strand, within ABZR87_RS17835 at 360.687 kb on + strand, within ABZR87_RS17835 at 360.687 kb on + strand, within ABZR87_RS17835 at 360.688 kb on - strand, within ABZR87_RS17835 at 360.791 kb on + strand, within ABZR87_RS17835 at 360.792 kb on - strand, within ABZR87_RS17835 at 360.792 kb on - strand, within ABZR87_RS17835 at 360.795 kb on + strand, within ABZR87_RS17835 at 360.796 kb on - strand, within ABZR87_RS17835 at 360.796 kb on - strand, within ABZR87_RS17835 at 360.796 kb on - strand, within ABZR87_RS17835 at 360.796 kb on - strand, within ABZR87_RS17835 at 360.934 kb on + strand at 360.934 kb on + strand at 360.935 kb on - strand at 361.079 kb on + strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.080 kb on - strand, within ABZR87_RS17840 at 361.084 kb on - strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.187 kb on + strand, within ABZR87_RS17840 at 361.188 kb on - strand, within ABZR87_RS17840 at 361.277 kb on + strand, within ABZR87_RS17840 at 361.278 kb on - strand, within ABZR87_RS17840 at 361.278 kb on - strand, within ABZR87_RS17840 at 361.340 kb on + strand, within ABZR87_RS17840 at 361.358 kb on + strand, within ABZR87_RS17840 at 361.358 kb on + strand, within ABZR87_RS17840 at 361.358 kb on + strand, within ABZR87_RS17840 at 361.359 kb on - strand, within ABZR87_RS17840 at 361.374 kb on + strand, within ABZR87_RS17840 at 361.520 kb on + strand, within ABZR87_RS17840 at 361.521 kb on - strand, within ABZR87_RS17840 at 361.521 kb on - strand, within ABZR87_RS17840 at 361.821 kb on - strand, within ABZR87_RS17840 at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.917 kb on + strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand at 361.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 6; outgrowth in LB remove 359,005 - ABZR87_RS17825 0.90 -0.8 359,110 - +1.0 359,219 + ABZR87_RS17830 0.10 +0.3 359,219 + ABZR87_RS17830 0.10 +0.5 359,219 + ABZR87_RS17830 0.10 -1.2 359,220 - ABZR87_RS17830 0.10 +0.3 359,279 + ABZR87_RS17830 0.18 +1.9 359,280 - ABZR87_RS17830 0.18 +0.1 359,727 - ABZR87_RS17830 0.73 -0.1 359,748 - ABZR87_RS17830 0.76 -0.5 359,901 + -1.6 359,901 + -0.2 359,902 - +0.5 360,004 - -0.5 360,049 - ABZR87_RS17835 0.13 +0.1 360,168 + ABZR87_RS17835 0.24 +0.7 360,246 + ABZR87_RS17835 0.32 -0.2 360,312 + ABZR87_RS17835 0.39 -0.3 360,312 + ABZR87_RS17835 0.39 -0.2 360,312 + ABZR87_RS17835 0.39 +1.1 360,313 - ABZR87_RS17835 0.39 +0.5 360,313 - ABZR87_RS17835 0.39 +1.0 360,516 + ABZR87_RS17835 0.59 +0.6 360,516 + ABZR87_RS17835 0.59 +0.8 360,517 - ABZR87_RS17835 0.59 -0.9 360,543 + ABZR87_RS17835 0.61 +0.4 360,543 + ABZR87_RS17835 0.61 -0.3 360,573 + ABZR87_RS17835 0.64 +0.9 360,573 + ABZR87_RS17835 0.64 -0.6 360,574 - ABZR87_RS17835 0.64 -1.1 360,582 + ABZR87_RS17835 0.65 +0.1 360,582 + ABZR87_RS17835 0.65 +0.4 360,582 + ABZR87_RS17835 0.65 +0.2 360,583 - ABZR87_RS17835 0.65 +2.1 360,601 + ABZR87_RS17835 0.67 -0.6 360,601 + ABZR87_RS17835 0.67 +0.1 360,602 - ABZR87_RS17835 0.67 +0.3 360,676 - ABZR87_RS17835 0.74 +1.3 360,687 + ABZR87_RS17835 0.76 -0.5 360,687 + ABZR87_RS17835 0.76 -2.8 360,687 + ABZR87_RS17835 0.76 +1.5 360,687 + ABZR87_RS17835 0.76 -0.7 360,688 - ABZR87_RS17835 0.76 -0.4 360,791 + ABZR87_RS17835 0.86 -0.3 360,792 - ABZR87_RS17835 0.86 +0.2 360,792 - ABZR87_RS17835 0.86 -0.0 360,795 + ABZR87_RS17835 0.86 +1.7 360,796 - ABZR87_RS17835 0.86 +0.9 360,796 - ABZR87_RS17835 0.86 +0.6 360,796 - ABZR87_RS17835 0.86 -0.5 360,796 - ABZR87_RS17835 0.86 -1.2 360,934 + +2.7 360,934 + -0.1 360,935 - +0.7 361,079 + ABZR87_RS17840 0.15 +0.5 361,080 - ABZR87_RS17840 0.15 +0.6 361,080 - ABZR87_RS17840 0.15 -0.2 361,080 - ABZR87_RS17840 0.15 -1.0 361,080 - ABZR87_RS17840 0.15 -0.5 361,084 - ABZR87_RS17840 0.15 +0.0 361,187 + ABZR87_RS17840 0.26 -0.3 361,187 + ABZR87_RS17840 0.26 +0.0 361,187 + ABZR87_RS17840 0.26 +0.3 361,187 + ABZR87_RS17840 0.26 +0.0 361,188 - ABZR87_RS17840 0.26 -1.2 361,277 + ABZR87_RS17840 0.35 +1.1 361,278 - ABZR87_RS17840 0.35 +0.8 361,278 - ABZR87_RS17840 0.35 -0.6 361,340 + ABZR87_RS17840 0.41 +0.7 361,358 + ABZR87_RS17840 0.43 +0.1 361,358 + ABZR87_RS17840 0.43 -0.2 361,358 + ABZR87_RS17840 0.43 +0.8 361,359 - ABZR87_RS17840 0.43 -1.0 361,374 + ABZR87_RS17840 0.44 +0.2 361,520 + ABZR87_RS17840 0.59 +0.2 361,521 - ABZR87_RS17840 0.59 -0.1 361,521 - ABZR87_RS17840 0.59 -1.1 361,821 - ABZR87_RS17840 0.89 -0.2 361,917 + +0.0 361,917 + +0.1 361,917 + -0.2 361,917 + -0.3 361,917 + +0.1 361,917 + -0.1 361,917 + -0.1 361,917 + -0.6 361,917 + +0.2 361,917 + +0.5 361,917 + -0.5 361,917 + +0.5 361,917 + -0.6 361,918 - +0.5 361,918 - -1.8 361,918 - -0.6 361,918 - +0.7 361,918 - -0.3 361,918 - -0.2 361,918 - -1.5 361,918 - -1.2 361,918 - -1.4 361,918 - -0.5
Or see this region's nucleotide sequence