Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14220

Experiment: rhizosphere sample 6; outgrowth in LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	rhizosphere sample 6; outgrowth in LB
3,001,643	+		ABZR87_RS14215	0.33	-0.4
3,001,643	+		ABZR87_RS14215	0.33	+0.8
3,001,643	+		ABZR87_RS14215	0.33	+0.1
3,001,643	+		ABZR87_RS14215	0.33	-0.0
3,001,644	-		ABZR87_RS14215	0.33	-0.4
3,001,644	-		ABZR87_RS14215	0.33	-0.7
3,001,644	-		ABZR87_RS14215	0.33	+1.1
3,001,664	+		ABZR87_RS14215	0.35	+0.2
3,001,664	+		ABZR87_RS14215	0.35	-0.3
3,001,664	+		ABZR87_RS14215	0.35	-0.3
3,001,664	+		ABZR87_RS14215	0.35	-0.1
3,001,664	+		ABZR87_RS14215	0.35	-0.9
3,001,664	+		ABZR87_RS14215	0.35	+1.0
3,001,664	+		ABZR87_RS14215	0.35	-1.6
3,001,664	+		ABZR87_RS14215	0.35	-3.0
3,001,665	-		ABZR87_RS14215	0.35	+0.8
3,001,665	-		ABZR87_RS14215	0.35	+0.0
3,001,873	+		ABZR87_RS14215	0.52	+0.2
3,001,873	+		ABZR87_RS14215	0.52	-0.2
3,001,874	-		ABZR87_RS14215	0.52	-0.2
3,001,880	+		ABZR87_RS14215	0.52	+1.5
3,001,880	+		ABZR87_RS14215	0.52	+0.3
3,001,881	-		ABZR87_RS14215	0.52	+0.4
3,001,910	+		ABZR87_RS14215	0.54	-0.6
3,001,911	-		ABZR87_RS14215	0.55	-0.8
3,001,911	-		ABZR87_RS14215	0.55	+0.7
3,001,944	-		ABZR87_RS14215	0.57	-0.2
3,002,118	+		ABZR87_RS14215	0.71	+0.3
3,002,118	+		ABZR87_RS14215	0.71	-0.8
3,002,119	-		ABZR87_RS14215	0.71	-0.3
3,002,486	+				-1.2
3,002,487	-				-0.9
3,002,487	-				+0.7
3,002,487	-				+0.6
3,002,487	-				+1.5
3,002,487	-				-1.1
3,002,487	-				-1.1
3,002,540	+				-0.5
3,002,540	+				+1.0
3,002,541	-				+0.2
3,002,564	+				-0.9
3,002,564	+				-0.4
3,002,565	-				-1.5
3,002,565	-				+1.5
3,002,600	+				-0.7
3,002,600	+				-1.2
3,002,601	-				-1.7
3,002,601	-				-1.1
3,002,601	-				+0.7
3,002,744	+		ABZR87_RS14220	0.11	-0.0
3,002,745	-		ABZR87_RS14220	0.11	+0.7
3,002,745	-		ABZR87_RS14220	0.11	+0.3
3,002,958	-		ABZR87_RS14220	0.22	+0.1
3,002,958	-		ABZR87_RS14220	0.22	+0.5
3,002,958	-		ABZR87_RS14220	0.22	+0.7
3,002,990	+		ABZR87_RS14220	0.23	-0.2
3,003,002	+		ABZR87_RS14220	0.24	+0.7
3,003,002	+		ABZR87_RS14220	0.24	-0.2
3,003,003	-		ABZR87_RS14220	0.24	-0.1
3,003,003	-		ABZR87_RS14220	0.24	-0.2
3,003,038	+		ABZR87_RS14220	0.26	+1.0
3,003,038	+		ABZR87_RS14220	0.26	-0.0
3,003,039	-		ABZR87_RS14220	0.26	+2.2
3,003,053	+		ABZR87_RS14220	0.27	-0.7
3,003,053	+		ABZR87_RS14220	0.27	-0.2
3,003,054	-		ABZR87_RS14220	0.27	-0.3
3,003,054	-		ABZR87_RS14220	0.27	+0.8
3,003,054	-		ABZR87_RS14220	0.27	-0.3
3,003,054	-		ABZR87_RS14220	0.27	-0.1
3,003,065	+		ABZR87_RS14220	0.27	-0.1
3,003,065	+		ABZR87_RS14220	0.27	-0.3
3,003,066	-		ABZR87_RS14220	0.27	+0.9
3,003,066	-		ABZR87_RS14220	0.27	-0.8
3,003,066	-		ABZR87_RS14220	0.27	+0.6
3,003,066	-		ABZR87_RS14220	0.27	-0.2
3,003,131	+		ABZR87_RS14220	0.31	+0.0
3,003,131	+		ABZR87_RS14220	0.31	+0.2
3,003,131	+		ABZR87_RS14220	0.31	+0.1
3,003,132	-		ABZR87_RS14220	0.31	+0.9
3,003,258	-		ABZR87_RS14220	0.37	-1.4
3,003,267	-		ABZR87_RS14220	0.38	-0.3
3,003,312	-		ABZR87_RS14220	0.40	+0.6
3,003,449	+		ABZR87_RS14220	0.47	-0.4
3,003,449	+		ABZR87_RS14220	0.47	+0.4
3,003,450	-		ABZR87_RS14220	0.47	-0.4
3,003,483	-		ABZR87_RS14220	0.49	+0.5
3,003,483	-		ABZR87_RS14220	0.49	-0.2
3,003,483	-		ABZR87_RS14220	0.49	+0.5
3,003,500	+		ABZR87_RS14220	0.50	-0.7
3,003,501	-		ABZR87_RS14220	0.50	-0.7
3,003,501	-		ABZR87_RS14220	0.50	+0.6
3,003,501	-		ABZR87_RS14220	0.50	-0.6
3,003,501	-		ABZR87_RS14220	0.50	-0.5
3,003,623	+		ABZR87_RS14220	0.56	+0.5
3,003,623	+		ABZR87_RS14220	0.56	+1.5
3,003,623	+		ABZR87_RS14220	0.56	-0.0
3,003,623	+		ABZR87_RS14220	0.56	-0.4
3,003,623	+		ABZR87_RS14220	0.56	+0.1
3,003,624	-		ABZR87_RS14220	0.56	+0.4
3,003,624	-		ABZR87_RS14220	0.56	-0.2
3,003,624	-		ABZR87_RS14220	0.56	-2.2
3,003,624	-		ABZR87_RS14220	0.56	-1.1
3,003,624	-		ABZR87_RS14220	0.56	+0.2
3,003,624	-		ABZR87_RS14220	0.56	+0.3
3,003,624	-		ABZR87_RS14220	0.56	+0.2
3,003,734	+		ABZR87_RS14220	0.62	-0.0
3,003,740	+		ABZR87_RS14220	0.62	-0.4
3,003,740	+		ABZR87_RS14220	0.62	-1.2
3,003,765	-		ABZR87_RS14220	0.64	-0.7
3,003,810	+		ABZR87_RS14220	0.66	-0.0
3,003,810	+		ABZR87_RS14220	0.66	-0.9
3,003,963	-		ABZR87_RS14220	0.74	-0.9
3,003,980	+		ABZR87_RS14220	0.75	+0.6
3,003,980	+		ABZR87_RS14220	0.75	+0.8
3,003,980	+		ABZR87_RS14220	0.75	-0.2
3,003,980	+		ABZR87_RS14220	0.75	-0.6
3,003,980	+		ABZR87_RS14220	0.75	+0.1
3,003,981	-		ABZR87_RS14220	0.75	-0.4
3,003,981	-		ABZR87_RS14220	0.75	-0.5
3,003,981	-		ABZR87_RS14220	0.75	-1.1
3,003,981	-		ABZR87_RS14220	0.75	+0.1
3,003,981	-		ABZR87_RS14220	0.75	+0.3
3,004,043	-		ABZR87_RS14220	0.78	-0.1
3,004,043	-		ABZR87_RS14220	0.78	+0.3
3,004,064	+		ABZR87_RS14220	0.79	+1.1
3,004,064	+		ABZR87_RS14220	0.79	-0.2
3,004,064	+		ABZR87_RS14220	0.79	+0.7
3,004,064	+		ABZR87_RS14220	0.79	+0.3
3,004,064	+		ABZR87_RS14220	0.79	-0.3
3,004,065	-		ABZR87_RS14220	0.79	+0.2
3,004,065	-		ABZR87_RS14220	0.79	+0.1
3,004,065	-		ABZR87_RS14220	0.79	+0.0
3,004,065	-		ABZR87_RS14220	0.79	+0.5
3,004,142	+		ABZR87_RS14220	0.83	-0.2
3,004,142	+		ABZR87_RS14220	0.83	-0.3
3,004,143	-		ABZR87_RS14220	0.83	+0.4
3,004,143	-		ABZR87_RS14220	0.83	-0.1
3,004,143	-		ABZR87_RS14220	0.83	-0.6
3,004,226	+		ABZR87_RS14220	0.88	-0.7
3,004,358	+				+0.9
3,004,384	-				+0.9
3,004,384	-				-0.3
3,004,391	+				+1.7
3,004,391	+				+0.4
3,004,406	+				+0.4
3,004,406	+				+0.4
3,004,407	-				+0.4
3,004,455	+				-0.7
3,004,455	+				+0.2
3,004,460	+				-0.7
3,004,461	+				+1.0
3,004,461	+				+0.3
3,004,461	+				+0.0
3,004,461	+				-0.9
3,004,461	+				-1.6
3,004,461	+				-0.2
3,004,462	-				+0.8
3,004,462	-				-0.1
3,004,473	-				+0.2
3,004,485	+				+1.0
3,004,485	+				+1.3
3,004,486	-				+0.3
3,004,486	-				+0.2
3,004,486	-				+0.4
3,004,514	+				-0.2
3,004,514	+				-0.1
3,004,514	+				+0.8
3,004,514	+				+0.1
3,004,515	-				-1.2
3,004,544	+				+0.4
3,004,544	+				-1.2
3,004,605	+				+1.2
3,004,605	+				+0.6
3,004,605	+				-0.2
3,004,605	+				+0.7
3,004,637	+				+1.0
3,004,637	+				-1.6
3,004,637	+				+0.8
3,004,745	+				-1.4
3,004,746	-				+0.7
3,004,746	-				+1.2
3,004,746	-				-1.9
3,004,746	-				+0.6
3,004,746	-				-0.6
3,004,746	-				-0.2
3,004,749	+				-0.8
3,004,749	+				+0.1
3,004,749	+				+0.2
3,004,749	+				-1.2
3,004,749	+				+0.5
3,004,750	-				+0.7
3,004,750	-				-0.1
3,004,750	-				-0.6
3,004,785	+				+1.0
3,004,786	-				+3.6
3,004,786	-				-0.5
3,004,831	+				+1.0
3,004,869	+				-0.2
3,004,869	+				+0.3
3,004,923	+				-0.4
3,004,923	+				+0.5
3,004,923	+				-0.0
3,004,924	-				+0.7
3,005,045	-				-0.4
3,005,111	+				+0.4